BtaINT0097068 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30119046-30120160:-
Coord C1 exon
chr19:30119771-30120160
Coord A exon
chr19:30119173-30119770
Coord C2 exon
chr19:30119046-30119172
Length
598 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTACCACTTTTTGAATGCAGGGA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAGATCGAGGCTGAGCGGGCCTCCCGCGCCAAAGCAGAGAAGCAGCGCTCAGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTGGAAGAAGCAGGCGGGGCCACTTCCGCCCAGATTGAGATGAACAAGAAGCGGGAGGCCGAGTTCCAGAAGATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAGGCCACGGCGGCCGCTCTTCGCAAGAAGCACGCGGACAGTGTGGCTGAGCTGGGGGAGCAGATTGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGACGACCTGGCCAGCAACATGGAGACTGTCTCCAAAGCCAAG
Seq A exon
GTACAATCATGATTTAAGTCTTAAAAGAGATTTCTGTGGGACAGGTGAGAGCAAGCCTTTCAGGAATCATTAGCAACTGTCAGGATGAGATTATGACAGGAGGCTAGTGGCAGGAAGGGCTAACCCCAGTGTGATGGGGCGAGTGTTCCCTCTTACACGAGACTAGCTGTACCCCAAGACTGTGCATCCTGAAAACTCAAGTTCTTTCCAATAAAAAATACAATTCAATGGTATATTTTGAAATTTTAAAAACACCTCACCTTGAATAGGCTCTTTGTTTTCCCCTTAAGCACAAATACATAATTTGTTTCTCAAAAAAATTTCTTGAGCTGAATCGTTGACTATCACTATTCTCATATCACAGATGAGCCAACTGAGTAAAGGTTTTGAGTCACAAGGCAATTTCATGGCAGTACGTTTAGACTGTTATATTTTGACTCTTTCCATCACAGCCTAAGGCCTCTGTTGGTTTTGTTTGTAAAGATAGCTTATTCTCGAAGGAAATGAGTACAGCAGCTCCTATGGAATCCTGGGATTACTGCAGATTTCCATGATCCAAATACTTGAGATGATGCCATCTACCACTTTTTGAATGCAG
Seq C2 exon
GGAAACCTCGAAAAGATGTGCCGCGCTCTAGAGGATCAGCTGAGTGAACTTAAGACAAAAGAGGATGAGCAGCAGCGGCTGATCAATGACCTAACGACTCAGAGAGCGCGTCTGCAGACAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(15.5=13.8),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(25.8=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGGAGGAGATCAGCGA
R:
TCAGCTGATCCTCTAGAGCGC
Band lengths:
347-945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development