MmuINT0103193 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67028420-67029469:+
Coord C1 exon
chr11:67028420-67028809
Coord A exon
chr11:67028810-67029342
Coord C2 exon
chr11:67029343-67029469
Length
533 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTACAACTCTTTGAATACAGGGA
3' ss Score
3.06
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCTGGCGGAGCCACTTCAGCCCAAATCGAGATGAACAAGAAGAGAGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACGCTGCAGCATGAAGCCACAGCAGCCACCCTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGATGACCTCGCTAGTAACATGGAGGTCATCTCCAAATCTAAG
Seq A exon
GTACAAACATGATATAAACGTCACAGAGATTTCAGTAGACAAATCACTAGGAACTCACGGGAGGACCAATACAAGTTGGGACTAGGGAAATGGGTAGTCTGATGTGCTCACCCTAAGTGAGAATAGCCATACCCAAATAATAGGAGCGAAAACAGAGCTCCTTCAGAAATCAAACATTACTATCCAGCTATACATTTTGAGGTTTTAAAATGCTTTATATCAACCATAGGGCTTTTCATTCATCCTTTCCGATCAAACAAAATTTGCTTCTCATGAACAGGCTCAGTGAGGCATCATTATCTTAAACCATAGTTAAGAAGATCTAGAGAAGGCACTGGATTCACCAAACAACATAGTAGTAGCAGTATGCTCAGACCACGTGCCTTGTTATTCTTCTCATGATAGTTGAAGCTTGTTATTATTTTTGTCTGTAATGGCAGTTTATACTCAAGTCAACATCTATGTCTGGATCACTCAAATGTTCTTTGGAGCAAGTTTTTGCTTGAATAGCCTCTACAACTCTTTGAATACAG
Seq C2 exon
GGAAACCTTGAGAAGATGTGCCGCACACTGGAGGACCAAGTGAGTGAGCTGAAGACCAAGGAGGAGGAACAGCAGCGGCTGATCAATGAGCTGACTGCGCAGAGGGGGCGTCTGCAGACGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.953
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(45.4=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(22.9=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGATCAGCGAGAG
R:
TCAGCTCACTCACTTGGTCCT
Band lengths:
353-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: