GgaINT0127795 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:442372-443021:-
Coord C1 exon
chr18:442644-443021
Coord A exon
chr18:442499-442643
Coord C2 exon
chr18:442372-442498
Length
145 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
TTACCTATGTTTATATATAGGCA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAACTGGAGGAGGAAATCGAGGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCGGCTCAGATTGATATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATTGACAACCTGCAACGTGTCAAGCAGAAGCTGGAGAAGGAGAAAAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCCAAG
Seq A exon
GTATAATATAGGTCTTACAGAGTGAGTGCTCACAGGAGTAATCTGTTCCTTGCTTCTCTTGAATACTTAGCAGAACATCATGAAGTAGTATTATTTTTCTTTGAATAAGAGTGACTCTGCTTGTATTACCTATGTTTATATATAG
Seq C2 exon
GCAAGTCTGGAGAAGACATGCCGAGCATTGGAGGATCAGCTGAGTGAGATTAAGACAAAAGAAGAGGAGCATCAGCGGATGATCAATGACCTCAATGCTCAAAGAGCTCGTCTGCAGACAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.945 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(45.4=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(26.6=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGAAGATGCGCCGTGAC
R:
CAGCTGATCCTCCAATGCTCG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]