HsaINT0107438 @ hg38
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]
Coordinates
chr17:10500626-10501499:-
Coord C1 exon
chr17:10501110-10501499
Coord A exon
chr17:10500753-10501109
Coord C2 exon
chr17:10500626-10500752
Length
357 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
CTACCACTTTTTGAATGCAGGGA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GCCCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGATCTCTCCCGGGAGCTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGTGGGGCCACCTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTACAGCATGAAGCCACGGCGGCCACCCTGAGGAAGAAGCATGCAGATAGTGTGGCCGAGCTTGGGGAGCAGATTGACAACCTGCAGCGAGTGAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGATCGATGACCTTGCTAGTAACATGGAGACTGTCTCCAAAGCCAAG
Seq A exon
GTACAATCAACACTTCACATTGATTATTTGGTTTTTTGTTTTTCCCTTTAGCACAAATATGATTTGTATCTCAAAAACGTCTCATGAACTAAATCAGGCACCCTTTTTCTCATATCACGTATAGTACAACTTAGTAAAGTAGTTAGATTAACAAGTAATTCAGTGGCTGTATGCTTGGACTATGTATCTTATTAGTCTTTCCATTCACTATCTAAGACCTTTGCTGGTTTTGTTTGTAAAGATAGTTTCTTCTCAAAATAAATGAGTACTGCAGCTCATATGGAATGTTTAGATTACTGAAACTTTCTTTGGTCCAACTACTTACTTGAGATGCCTTCTACCACTTTTTGAATGCAG
Seq C2 exon
GGAAACCTTGAAAAGATGTGCCGCGCTCTAGAAGATCAACTGAGTGAAATTAAGACCAAGGAAGAGGAGCAGCAGCGGCTGATCAATGACCTCACAGCACAGAGAGCGCGCCTGCAAACAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061:ENST00000226207:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCGCTCTGATCTCTC
R:
TAGAGCGCGGCACATCTTTTC
Band lengths:
358-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development