DreINT0100052 @ danRer10
Intron Retention
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40751557-40752159:-
Coord C1 exon
chr6:40751770-40752159
Coord A exon
chr6:40751684-40751769
Coord C2 exon
chr6:40751557-40751683
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
AATCATGTTGTATTTGGCAGACA
3' ss Score
5.59
Exon sequences
Seq C1 exon
GCTCGCATTGAGGAGCTGGAGGAAGAAATCGAGGCAGAGCGAGCAGCTCGTGCTAAGGTCGAGAAGCAGCGATCTGATCTCGCCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAAGAAGCAGGTGGTGCCACCTCTGCCCAGATTGAGATGAACAAGAAACGTGAGGCTGAGTTCCAGAAACTGCGCCGCGATCTGGAGGAGTCCACCTTACAGCACGAAGCCACGGCTGCGGCACTCCGCAAGAAACAGGCTGACAGTGTGGCAGAGCTGGGAGAGCAGATCGACAACCTCCAGCGTGTGAAACAAAAGCTAGAAAAGGAGAAAAGTGAGCTTAAAATGGAGGTAGATGATGTGTCAAGCAGTATGGAGGCTGTTGCCAAATCCAAG
Seq A exon
GCAAGTTTTAGCATATTTATGAAGCACTCTTTGTGAAACTCAGTCCTAAACAATAAAATCCATTAAAATCATGTTGTATTTGGCAG
Seq C2 exon
ACAAATCTTGAAAAGATGTGTCGTACACTGGAAGATCAGCTGAGTGAGTTTAAGTCGAAACATGACGAACATGTTCGCCACATCAATGACCTAAGTGCTCAAAAGGCAAGGCTTCAGACTGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993:ENSDART00000156295:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.860
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(44.6=100),PF0157614=Myosin_tail_1=FE(15.0=100),PF131661=AAA_13=PU(6.0=10.0)
A:
NA
C2:
PF0003816=Filament=FE(14.5=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF131661=AAA_13=FE(19.4=100),PF0003816=Filament=PU(1.9=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGAGCAGATCGACAAC
R:
ACTCACTCAGCTGATCTTCCAGT
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]