HsaINT0107560 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10219216-10222496:-
Coord C1 exon
chr17:10222107-10222496
Coord A exon
chr17:10219343-10222106
Coord C2 exon
chr17:10219216-10219342
Length
2764 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
TGACTTTCTGTTTGTTAAAGAGT
3' ss Score
5.8
Exon sequences
Seq C1 exon
GCCCGCATAGAAGAGCTGGAGGAGGAAATTGAAGCGGAACACACGCTCAGAGCCAAGATTGAGAAGCAGCGCTCAGATCTGGCCAGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCAGTGGGGCCACTTCAGCCCAGATTGAGATGAACAAGAAGAGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAAGCCACAGCAGCCACCCTGAGGAAGAAGCAAGCAGATAGTGTGGCCGAGCTTGGGGAGCAGATTGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATTGACGACATGGCCAGCAACATCGAGGCTCTCTCCAAGTCAAAG
Seq A exon
GTACCTGACTGGCCCTTCTGCTCTTGGAGAATGCAAGGCAGCCGACGGCCACCTGCCCCTGGGCACGTGTAATTTGATGCCTCCAAACCACTGCATGTTCTACACTGAAACCCTCTTCCCTATTTCTGCCTGTTTCTAGTTCCTCAAATTTACTCACGTCCTTTGTCTTATCCATTTGTGCTTCTGTAACAAAATATTTTAGACTGGGTAATTTATAAACAACAGAAATTTATCACTCACAATTTTGGAGGCTGGGAAGTCCAAGATCAAAGTGCCAGCAAATTCGGTGTCTGTCGGAGGCCTGTTCCTCACAGATGGTGCCTTCTCATTGCATCCTCATGTGGTAGAAGGGGTGAACAAGTTCTCTCAGGCCTCTATTATAAGAACACTAATCCCATTCATAAGGGCTCCACCCCCACGACCTTATCACCTCCCAAAAGCCCCACCCCCCAACACCACTGGACTGGAAATTATGAATTTTGGGGGGACACAAACTTTCAGACCAAAGCATCAAGATCACTTGATTCAAGCACAATTGGATGATCTGGCACCACTGTTTCGCTCTTGTTCCCCAGGCTGGATTGCAGTGGCGCCATCTCAGCTCACTGCAACCTCTACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACACGCCACCAGGCCTGGCTAATTTTTGTATTTTTGGTAGAGTTGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCCGATTGGGGCTCTTTAAGAAAAAAGTATACAAACTTATAAAAATTAGGCATGAAAGTTGATATTTAAAATGAGACAAAAAAGTCGCAGGTTACCTTGAAGACTCAAGTTCTTTTCTCCTGAGGCCTCTTTGGGCCATTTGCCAGAAATGCCTTCTAGAATATTCTGCTTGTGATGGCTCCTCTTCCCTTGAACCTTCTGCAGCTCCCAGACTCTCTGTGGCCCATGCAAATGCGGGCCCTGAAGCTTATTTCACAAGCTTCATAGTGAACCCACCTCTGTGCATGGCCTCAAAGCAAAGAATTCCTCGTGGAGCATGTGTGCTCCTCGATTTAACACGTGCCCTCCTTGCAGGGTGCTCTGAGCTGTACTAGGAGCTGTTTGGCTAGACTGGAAGAAGCAGTGGTGACCCTAGAAGCGAGGCTGTGGGCCTCTCACCGAGGGTTTCCCGGAAGGTCAGGGCATCTGTCCAGAAAAGGAAGGGAGATATGAATCAGAGAACTAGAGTGGTCTCTCCAGCGCCCCCTGCTGCCAGTGTTTAGGGTCTGCGTCCACGCAGCCCTGTGCCTCCTTGATTGCTTCTTCACTCCGCGACTGCAGCCTCTGGCTCCGGCTGATGACTCCTTTTCTCTTTCTTTCCTGCTTTCCCATGTGTTTGCCCTTTTTCCCTTGGTTTTCTTTCTTCCTCTAAGAACTTGGTTCTGTAAATGTTCCCCTCCCACACCTCTCTCTCGGCGAGCCAGGCCAGCCTGCAGGGGTAGCTGGGTAGGAAGGGCCTCCAGCATCCCCCATACACTATGCCTATAAACAGCCCCCACTCCAGCCTCCCTATCTCCAGAATTGCCGTGTGCTGCTCTCTGTTCTCAATTTTAACATCCAGGGGAAGCAGCACGTCATGTCTCTTAACGCTTTTTCAGTTGTCCCCTTTGACGATTCTCCTTGCAAGCTGCCATCGCGTTTCAACTCTCCCTGCTTTGATTCCTTCATGTTTGCGTGTCATCTTCTCAAAGAGATCCTAAGCTCCTCCAGGACGCCCGTGGAATTAGTGTCCCTGCTTCCTCCACTGCCATCTCATACTTACCATTCTAAAGAAAAACATATGCTCTATACATTTTATTTTCTATTTTATGGAGCAGCAGGAGGAGAGAAAGGTCAACACACACAAGGGTTTTGAACAAACTTCACAAAAATACAGGCCAACTGGAAGCCAGAGAGGTGAATCTCTTCATACGGCCTGCACCATGGGGAACCTTCTGTGTTATTGAATGAAATGCTTAACACTGTCATCTGAATATATTGCTTGCAAATATTCACAGGCTTGTATTGCTTGCAATTATTCACGAATCACTTATATTACAAGAGGATCCCAAAGATCCACTTAAAAGTGACATCTTCTCAAAGGGTTGTTTACAAATCATTAAATACTTATCTACCTGATGTTCCAAGTGATTGGTGATTGAGCTGCATTCACAAATCTGAAATAATTATGATTTTTTTTTTTGAGACGGAGTTTCACTCTTGCCGCCAAGGCTAGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATTTCTGTATTTTTAGTAGAGATAAGGTTTCACCATGTTGGTCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATCCACCCTCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCGCCTGGCCGATTATGATTTTTTTGAAACTGAACTTTTTTTTGTTCTGTACTTTTATTTTTATTTTACCTGACAAGAAACTAAATGATTACACTGTTCAGTTCAATGCTGGGCACTAGGAATCCATTTCTTCCCATTCGTGTTGACTTTCTGTTTGTTAAAG
Seq C2 exon
AGTAACATAGAAAGAACGTGCCGGACGGTAGAAGATCAATTTAGTGAAATCAAAGCCAAGGACGAGCAACAGACACAGTTGATCCATGATCTGAACATGCAGAAAGCAAGACTGCAGACCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.930
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)