MmuINT0103312 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67169305-67171736:+
Coord C1 exon
chr11:67169305-67169694
Coord A exon
chr11:67169695-67171609
Coord C2 exon
chr11:67171610-67171736
Length
1915 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GCATTTTTGTTTTTTTTCAGAGT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCCCGCACAGAAGAGCTAGAGGAAGAAATTGAAGCAGAGCACACAGTCAGAGCCAAAATTGAGAAGCAGCGCTCAGACCTAGCCAGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCAGTGGGGCTACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAATCCGAGTTCCAGAAACTTCGAAGGGACCTGGAGGAGGCCACACTGCAGCACGAAGCCACAGCAGCCACCCTGAGGAAGAAGCACGCGGACACCGTGGCGGAGCTCGGGGAGCAGATCGACAACCTGCAGAGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGATGACATGGCCAGCAACATTGAAACAGTCTCCAAGTCAAAG
Seq A exon
GTATCTGACGGACTCTCTGCTCTTGGCAGCCATGTCTTCCCACCACGTGAACAGTGGAATTTGATGCCCCAAACTCACTGTGTGTCATACATTGTTAACATCTTCCCACCTCTGTTTTTTTTCTAACTCTTCAAATTCTTTCAAGGCACATGCCCTAAATAACTGAGGCTACTATAACAAAATACCTTAGACCTGGCAATCTTAAAAATAACAGAAGTGCTGCTTACAGTTTGGGAGCTGGGAAACCTGAGATCAAGCAACCATTAGACTCATGTCTGGCCAGGGCACTCTCTCCTTCTCCCTCTTCCTCTCCCCCCTCCCCTCCCCCTCTTCCCCTCCCCCTCTTCCTCTCCCCCTCTTCCTCTCCCCCTCTTTCTTCCTCTCTCCCCCTTCTTCCCTCCTCTGTGCCTCTCTCTGTGTGTCTTTCTGTCTCTCTCTGTGTCTCTATCTGTATATCTTTCTTTTTCTATAAGTGTGTGTGTTACTTGAATTAAACACAGGGCCTTGCACATGATCTAGGCAAGTCTTCTACCCCTGAGCTATCACCACAGTCCCTTTGCCATCTATTTTTAGATTCTGTTTTATATAGTATTGCTTTCTTCTTTTTTTTTTTTAGATTTATTTTAATTGGGGGTGGGAGAACATTCATGTGCAGGGTGCCCACAGAGACCAGAGGAAAACGTTGGATCGCCTGGAGCTGTACTTACAAATGGGTGGAAGCTGCCTGACAAGGGTGCTGGGAATCAAATTCTAGTCATTCCCTGTCTTAGTTCATTTCTTATTGCTGTAGTAAAATACCCGAGGCTCTTTACTTTATAAAGCAGACAGCTTTATTGAGCCCCTAGTTGAGAAGATGTGCCAGCATCTTTTTAGCTCAAGGAAGGACAGCACATGATAACACATTGGTGGGAGCATTTGTTAGAGGAACATAGATGCCAGTCAGTTTTACATCAGCTCATTCTCATGCCTACTAATCTAATGTTAAGAGACCAGCATCAATCACTTCGGTGAATGGTACCCAAATGACCTAATTACCTCTCATGAAGCCCCGCCATTTAAAAGTCCCACCTCCCCTTGATACCACCACACCAGAGGCCAAGTTTCATCTCACAGCATCCTTCTTCTGGAATAGCTTATTTTACCACGTTCTCTCAACTTTAAGGTCCAGCCTTTCTTGGTTTACATTACTTTAAGTCATTGTATCCTTTGTGTTTTCTTTTTGAGACTTATCTTTCCTCTCAGACCCCGCCCCTGCTGGAGGTCTTCTACAAGCGCCATCCTCAAACAGGTCCTGAGCTCCCTGAGGACCATCTTTGATCTAATAGCCCTTCTGCTGCTGCACATACATGTCTTACACTTCCCAGTCTGAAGGAAAGAAAGCACATGCTCACTTTATTCTATATTTAATGGGGAGGGAAGGGAAGGGACATCTGAAACATGCACAGGAGTTTTGAATGAACCTCATACAACTACAAGCAGACAGGAGGCTGGGGTAGCGACATCCTCATCTCTATAACCCACCCTCCAGGACCCACTGTCGTGTTGAAAGAAACACTGCTTCATGTAGGCAGGGCTTGTGGAGAGTCTCCATCTTTTAATAGACTTGCTAATCTTCCAGCACGATCCCAGGGTTCCTGTGAGTGGCATCGTATCAGGATCTGGTTTACTAATCACTGGATGCATACATACCAAAGCTGGGACATCCCGCACTACTGCTGATTAAACAGCAACCACACACAATAATCCAAATGAAAAAGTAAATCCAAAACGATAATGATTCTTAAAACCAACTTTCATCTGCTCTCCATGGTTTCATTTAGTCCAACAAGAAGCCAGACAATCAAAACGTCCTGTTCATTGCTGGGCACCAGAAACCCACTTCCCCATTCCCACTGGCATTTTTGTTTTTTTTCAG
Seq C2 exon
AGTAACATGGAAAGAATGTGCCGGTCTGTGGAAGACCAATTTAACGAAATCAAAGCCAAGGATGACCAACAGACCCAGTTAATCCACGATCTGAACATGCAGAAGGCAAGGCTGCAGACCCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGAAGCAGCGCTCAGAC
R:
ACCGGCACATTCTTTCCATGT
Band lengths:
358-2273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: