BtaINT0097247 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53547953-53554833:-
Coord C1 exon
chr1:53554718-53554833
Coord A exon
chr1:53548146-53554717
Coord C2 exon
chr1:53547953-53548145
Length
6572 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TGAATGTACTCTAAAATTAGGAA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GGAGCTCTGGAGCGTAATGAAAGCAAGGTTCTTCGTTTGCAGCTTGAACTCTCAGACACTAAAGCGGAACTTGAAAGGAAGCTTTCAGAGAAAGATGAAGAAATAGAAAATTTTAG
Seq A exon
GTATGTACAATTATTTTGATGAACAACAGTTACATGTTTCAGGATCCTTAACTGAACAAGGATTCATTGTGTTTGGCTACTTTTATAACCTTTGTTGGAATATCAGCACAGAGACCGCTGGTCTGACCCAACACTAGACTCTTCCTAGTCAGCACAGCACTGTTAGTATAAAAGGATACCTCTAACATGATTACTATTAATGTTTATGATTTTCTTATTCAAGCAGCTTTTACTTGCGTACAAAACTCAAGATAACACACCAAAAAAAGCCAAAGTATGTGGATAAGGACTGTATATACTGCCTGGGTCTCCCTACAACAAGCTTCTTTCTTGAGTATTCAAGACACTGACTGATGGTGCCGAACAGTGAAGGAAAAGAACCCAAAAAAAAGTGATGCTGGACATTAAAATTAATGTCAGATCAGAGTGAAGTTTCCACCTCCCCCCTGCCTGTACCTGTAGCCATTTGTTTGGAGAGGGGCTAAAGCTAAGAGCTAAGCTGCTTATTGAATCCCTGTTGAAGCAGCTGAGTCTTAATAGTCAGGAAACTGAATTAAATAGGAATCCTGGGTTGCAGGATCTTTTCTTAGCTTCATCATAACAAGCTGATGATTTTAGACATCTCACTTCTTAGCTTCTCAGTGAAGTGAGGGGATGAAAGCAGCCCCATCCGTGTCACAGAAGGTGGCGAGGAAGATCAGTAAGCCAATGTTGGCAAAGCACTTCATGCTCTGTAGATCAAAGACACCATTATAAACACATGGAATTAGCTATGATTGTATTATCCATCTGATCTGTTCCCTTAAGTCAGTGCCATATGTCAGCAAGGAAAAGCATTTTTGAGTCTGAGGTTCAACTGGCAATTTGCTTTCAACATGTTTGTTAAACCATTAAGAGAAAAGGTTACCATGTTCAGTTAAACTGGCCTCTTCCCCATAGCCCACCTTCAGACAAAACTCCCATGGGGGTCATCTTTTTAATGAGGGTGTCAAGCCAAATTTGGTCCTCTGTGTGCTTTGAGTTATCTTTGCTCTCACTCACCGGCACTTTCCTCTATAGGACTGACGGTGGGGATGAAATCTGGTCTACTTAAGAGGCTGTGCCTAAAAGACTTTTTTTTTTTTATAAAGGGCAAAAACATTGGACCTTGATATTTGCCCTACTTCCTTCCACGAGGAACAAAAACGAATGTCTCCTTGTACCATTAAAAAAAAAAAAAAAAAACTCGTTTCAGGTAACGTCAAACCTGTGCCTATTAATAAACCCAGCTAAGAAAAAATGAGTCCTCAGAGAGTCTGCGTCTTGTCAGGTACCTCTGATGTCGTAGAGAGAGCTGTTCACCAATTATAATAATTTAAGTGCAAAGGAAGCTGGAGATCCAAACAGCTAGGGCTGGGAGAAGAAAGAATTGAAGCTGAGGCGGGAGCTGTCAAGGGGCTGAAAAAAGAAGGGCGGGCTGGAGGGAGGAGTGAGCTGTTCATGAGTTTTAGTTAATGATTCATAATAACTGTAATAGCTACATCCGGAAAGGAAAGATGAGTATATCTTAACAAAATATCACAAGTACTTTGTAGACCCTTTCTGTCTGAGTGCCCCATGCCAGTGGAGACTAGATCAGAAACCCTTAATCAGAGGGTCTAGTCTGACTTCAGGGCTAGGAGAGGAAGGGATCTTAAGAAAACGGAAGAGAACACCAAGGGGAAATACTAGCAAAACATAGGATTTTGAGCAATCAAAGATAAGCCAGGTAAAATCTAGGACTCAAGGGAAATATTGCCTGAGGAAAAGATGAGGCTCAAGGTCCTATTTCACATAATGCTTGGATAACTCCGTAGAAACTGAGGGAGGCATAGGATACAGGACTCAGGATGCTGAAGGGACCAGGAGTACCTCTGAGAGAGACTCAGAGGCAAAGGTAAAAACCTTGGTAGGGCTGCAAATTCTGGTAATTCATTCACTTCACTGATGCTCTGCCTCCCAGCCCACTGTTCTTCCATTAGGTGAGGGCTGATCCTTCGTGAGCCAGGCTGGAAGCCTGTTGGGGTGAAAGAATGAGTGGCTCATATGTGGGTTGTATGTTTCACTTGTTCCATAGTTATTGAGCACTTCATGTTGGCAACATGCTGTGTCTGCTATTCTAGATAGGGCTTCGCAAACTTTTATGAATCGATAGGGCTTTTTTGCGGAGAAGGCAATGGCACCCCACTCCAGTACACTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTTGCTAGGAGTCAGACAAGACTCAGCGACTTCACTTTCTCTTTTCACTTTCATGCATTGGAGAAGGAAATGGCGGCCCACTCCAGTGTTCTTGCCTGGAGAATCCCAAGGATGGGGGAGCCTGGTGTGCTGCCATCTCTGGTGTCACACAGAGTTGGACACAACTGAAGTGACTTAGTATAGCATAGGGCTTTTTTGTTTCCTTACAAATGTTGTAATTAGCAAAGCTAGAGTTAGAGAGGTGATAATGCAGTCACTGATGGAAGGAGGGGCTTTGATCCTCACCCTCCTCTACCAGGAAAGCAAGAGTGATATCCACGGCCAGCTTGAAGGCCAACTGGCAGCTGTGACCGCCGTCTAAGTCGGGCCCTGCTGCAAGGCCCCAGCCGGGGTTGAAAATAAGTTAGGTGTGTGTCCTGAATCTTCCAGGGCCACTGGCTAAGTACATCCCCCTCCCAACTCAGGGTATTCATGAAAATGCTGAAATGTGTGGGGGCTTCTCAGTGGACCAAAACTGGGGTGTCCCAGCATGCATTCTGCTCTCTCCAGACACACCCAGAGAGATGCTGGGGAAGGAGTTTTGGGGAGTGAGGCACCAAAATTCCCTATGCTATCAAAATGTATTTGTTTGCTTTGCTTTGATCATCTATGGAAGGGTTAGGCAAGCTTTTTATTTATGGCATCAGATGGTAAATATTTTTGGCTTTGTGGACCATAGAGTCTCAGTTGCAGCTACTCAAGTCTGCAACCTTAGCTTGAAAGCAGCCATAATAAGAGATCAAATGACATGGCCGAATTTGGCCCAGAGCCCATAGTTAGCTCACCCCTGACCTGTGACCTCAGGTTCCTAGGAATGATCCATCATCTTTTCCTTCCATATGGTTCACTCCTCTGAACTTAGTAATACTGAACTTTGCCACATGGTCTTCATCTACATGCACTATCCAACTTAATTTCTTTTATTGTCTGAGTCTCTTCCAGAAGAATATGTTTAAATTTCTTCTCCTGTCTAAGTAAAATATTTTAGCACAACTTCAAGATACAGGATCTCAAAATCAGGCATGGCATTTAGTTAGCAAAATATCTTGTTAATCATTTTAAAACTGAATCGTATGTATTAGAATTAAGGAAAATCTTTCATTTCTGTGATATAGATGAGCAACGTTGCAAGAGAAAAATATTACTGATTGAATTGACAGTTTAAAATCCTTAGCTTTTTCAGAATTTAAGCTTTTATTCTGATTTTGTTTGCATTTGTTTTCTTTCCTCAAATTATATTTCACATTTTGGGAAAAATAGAAAAGGAACTTTTACCATATTGCCTTGGTCTTGACTGCTTCATTTTTCTTTAAAAAAAAATGTGCTTGAGGAGTTTTCATTTGAAAGATTTCTTGACTCTGCGTGGAATGTGCTGATTGTTTAGTGGCAATTCTCCAGGCCTGTATTATATGGAAGCCTCTTAAACCGTAGCACTTTCTACTTGTCTGTAGGTACTCATGAAATTGCATAAACAACTGTGGAAAAAGTACAGTTGAAACATCCATTTTGTTTGCTTAAGTGGATTATATCTCTGTACGGAGGATTTTGACACCAGCCTAGTGATGCTTTAGTGTTCCTGTATAAGTAGAGTCAGTTCAGCAAAAATGAGTTTCCTTATGTAAGACAGAGCAATATCTCAAAGCTTTCAGTGCTGTTGAGTATGTGTCCCTGTAGTACTTGTGGGCTAGGGCTGCCATAACTAAATAGACTGGGTGGCTTAAATAGCAGAAATTTATTTTCTCACATTTCTGGAGGTTGGAGGTTCAAGATCAAGATGTTCCCCCTGAGACCTCTCTCCTTGGTTTGCTGGATCCTCACATTTTCTTTTCTCTGTGCACACTCATCCCTAAAGTTTCTGTCTGTGTCCACATTTCCTATTCTTCTAAAGACATCAGTAAGATTGGATTCAGTTCAGTCGCTCAGTCATGTCCAACTCTTTGTGACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACCCAAACTCACGCCCATCGAGTCAGTGATGCCATCCAGCTACCTCATCCTCCGTCGTCCCCTTCTCCTCCTGCCCCCAGTCCCTACCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAAAGAATACCCAGGACTGATCTCCTTTAGAATGGACTAGTTGGATCTCTTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCACCACCCTAAGGGCCTCATTTAACTTAATCACCTCTTTAAAGGTCCTGTCTTCAAATACACTTGCATTCTGAGGTACTGGGGTTTAGGGCTTCAACATATGAGTTTGGTTGGGGTGGGGAGAGAGACACAATTCAGTCATAATAGTCTCTAGTGACTTTATATGCTGGCATCCCTGTGGGATCCTCTTCTGGCAGCCAAGCAAAAGCCCAGGACCTAAAGGCAGGCAGGAGAGTCTGACCACAGCATATGGAGGCACAGGAGATGTGCTAATTCTGGGCTCTGGGGCCAGAAAGTTTTTTCTCTTACATTTGCATAATTACTTCTGAATGCCCCCTCCATCAATGGGGTGAAGTGTGGTCATGAAAAGTGGCACCTCCACCTGTCACCTAGTTGAAAACTCTGACCACACTCTTACTCCTCTGCAGGCTGCGTGTCTTCCTGATTGGCCTTGGAGCTCAGAACACAGGCTCAGCGATAACTCAGTGTGGAACCTAATTCTGACTCAAAATGAGCATGTGTCTGCTATTTGTGCTGATAGACTCTATGAGTATGGCTTGTCTTATCTGTCCAGTATTAGGCCCTGCTTCATAGGGTGAGTTTAACAGGGCCTGTGTTAGTTATAACGGTTACATTGTCCTAACTCACAACCACCCAATCTCAATGGCTTAAAAGTGTATTTTTGCTTTGTGTCAGAGTCCAGTGTGGGGTAGGATGGAGAGTGGGCCACTACTCTTCCAAGTCATTCAAGAACTCAGGTTCCTTCCATCTTTTGATGCCAGAGGGTTCATTTGTGGCCATCAGGTTTGCCATTGATGGGGAAGAGAACACAGGATCATGAGTAAAAAGTTGTATGTGTGAGGCTTGGAAACACTTTTGCCCATATCAGTTGGTCAGAATTCAGTCACACAGTCCCAGACTTTCTGCAAGAGGTTTGGGAAATGATTTCTCGGGGTTCCCCATATTTTTCCTTTGTCTTCCTGAACACACATCTATTGTGTAAGCTTCTGGCACTTTGCAAAAATGGTTTCAGCATGGATGTTATAAAGGCATGTTGAAGTAATTCAATATCACACAGCAGTTAGTTTTCTCAGCCTATCCTTGGTTGTACTCCCAAACTCCTGGAGAAAGATAACCATGCTATTCTAGGAATTAGGTGTCACAGGTCATTAGAGCAGGTTTGCTGGTACAGGACTTGTTTCAAGCTGGATGACTGTTTCTTGCTGTCTTCAAACATGTTTCACCATTGAAAGTGTTTAAATATTATGCCCATCTGAAAGAGCATCCTCCCTTCACTCTTAGCCACTATAGGGAATCCAGATATTTGCCTTAGACTGTCCTTGAGGAGGTCTTAGACAAGGGCAAAGTCTGTCCCACAGGAATCTCAAAAATATTCTAGTGCTTTTCTCTTTTAAATTTTATTTATATTTATTTTTGGCTATGCTGGGCCTTCATCGCTGTGCAGGCTTTTGTCTAGTTGCAGCGAGTGGGGGCGACTCTCTAGTTGTGGTGGGCGCTTCACATTGTGGTGGCTTCTCTTGCTGTGGAGCATGGGCTCTGGGACACATGGGCTTCAGTAGAAGCGGCATGTGGGCTACAGAGCACAGGCTCAATCGTTGTGGTGCACAGGCTTAGTTGCTCTGCAGCAAACCAGAGATCAAACCCGTGTCTCCTGCATTGGCAGGCAAATTCTTTACCACTGAACCACCAGGGAAGCCCACTAGTGATTTTCTTGATTTTTCTGGGGAGTTGACATGGAAAACAGTTGATCTGATACAATGTACAAATGCTCACTGATCTAACCCTTCAACCTCCATGGTTTCCAGATGAAGACGCTTTAGACTCATTTTGTTAATTACACAGAATCTGTCTTGAATTTTAAGTTTTTCTCTGATTCTTAAACTGTTGTGTGTACACAGCAGGTACCCTTTCTCAACCTGGGTGCATGATTTCCCCCCTGAATGTACTCTAAAATTAG
Seq C2 exon
GAAGAAGCAGCAGTGTGCTATTGACTCCCTGCAGTCGAGTCTGGATTCCGAAGCTCGTTGCAGAATTGAGGCCACCCGGCTGAAGAGGAGTATGGAAGGGGACCTCACTGAGATGGAGCTCCAGCTTAGCTGTGCCAGCAGGCAGGCATCAGAGGCCACCAAGTCCCTGGGCCAGCTCCAGACCCAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development