GgaINT0119203 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90783506-90785585:-
Coord C1 exon
chr1:90785470-90785585
Coord A exon
chr1:90783699-90785469
Coord C2 exon
chr1:90783506-90783698
Length
1771 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTACTTTATCCAAAAATCAGGAG
3' ss Score
2.5
Exon sequences
Seq C1 exon
GGAGCTTTGGAGCATGAAGAAAGCAAGACCCTTCGTTTTCAGCTTGAGCTTTCTCAGCTTAAAGCTGATTTTGAAAGGAAGCTGGCAGAAAAGGATGAAGAAATGGAAAATATAAG
Seq A exon
GTACTGTGCAGAGCTTTTATTTACGTTTCTTCTGCTAATAAAAGGATCAGGAATATTCTCAAGACCTAAGCCAGCCAAACAAACCACAGCTAGTTATGCCAGCAAAAGCAGATGCTGGCAGTACCAGTAACTAAGGCAGCTCTGGTTATTGCCCTCTGCCAGAGGGTAGTTCTACCACCAGATCTTTTCTTAGTTCAGATATTCCTGTCAGTCCAGTCTCTCCAGTGTACATGTAAACCCGCCAGACACATCCCAAAGCAGCTACAGGAAAACCAGCTGGCACAGTCATGAGCTGCTAAGCCTGTATGTTTACAGTAGGAAACAAGCAGACATGCAAAAGACAGTTTGCTGCCTCCTTGCAGTCTCCTAGAATGAGCCCCTCCCAAGGGGAACCACCTGGGAGTGGGAATCAGCAGAACTGTTGCAGTGGTGCTCAGATTGATGCTACCTGAAGGCAACATTTAATTCTGCATCTGGTTCATTTGTGCAGTCATAGCTACACTGTTTGCAGGAGGACACAAGGAGCTTGCAGTTAGGCATGCACAATTTGGGTAAGCGGTGAGATTTGATGAGGTACGGAAAGCGTGGATATAAAAGGAGAGGAACCTGCAGGTAAAAAGGGGGTGAGCAGCAGGAAAAAGGAAAAATAATCAGATGACAGAAGGATGAAATCTTTTCCCCTCTTTCCTCTAGCACAAACCCTAGTCTGAAGAGTTAGACTGATTACAGAGACCACAGGACAAGCCATTCCATTCGGTGTTCCTGACTCAGCCACACTGCGTGTTTTGCTGCTGGGCTGCCCAGCAGGCAGGCAGTGCTATCCTTGGGAATCTGGGGCACAGTTCTCTGTCTTGCCCAAGCAATAAGACTGTCAAGGTTTTTCTTGTTGCCTTAATGAGTTCCCAGAAATGATATGCAAACAGCAAAGCCCGGCCAAGGGTGAGATGAAATTTTTTTACTGTGTGAGTCATACTCTGTGCATTGAGTTACTTTCTGGCTGCAGGAGAGCAAAACCTTCACCTTGGAACTCAGAGCGTAGAACTGCGGATTTTAAGCCTCTCTGTTCTGACTGTTAGAGGAAAATTATGCACCTGTCTCTATTTGTTTTGCCATCTCTTAAATTGACAGTAAGCTGCCTTTAACAGGGGGACCAGCCTGTTAATTACAGTGGGCTTAATCTCTTCTAACTTTATACGTCCATAACACAGATTTCTATTCCCAATCTAGTCCCATGATAATTCAGCATACAAAATATATGTTCCAACATCTACTTTTAGGTGCACTAAATTGTAACTTGCAAGTGCCAATTATTATATAAAGAGCCCCTAGAGTGATTAGCTTGAATGTAGCTACCAACCGTCAGTTTGATTAATCTCCTTTCTTAATGCCTTCATGTAAAGCATCCCAGTAGATAATTCAGTAAATATGGCAAGTGACAGTTAAGCATGAAGTGCTTCTTGCGAGGTTCAGGCCTGTACCTGCTTGTGCTCATAAGATACTTGAGGAAGCTCCCTGCTGAAAGACTGCCAAAGAAAACACGGGAGAAGGAAGCTATAGGTGCTTACAGATCAGGAGTTGGCTGAGAGTGTGAAACACAGCAACAAGGTGCTAGAAACCCATGCTATGTGTGTCACTCAGAAATGTAGTGCTGCTTCTAGATGAGACACCTCTTGAAAGTGAAATACGGTTTCACGTAGATCTACGTCCCTTTCCGATGAGTAAAACAACTCCCTTCACCCTTAATTTCCCATCTACTTTATCCAAAAATCAG
Seq C2 exon
GAGGAACCAACAACGCACCATAGATTCTCTGCAGTCCACCCTTGATTCTGAAGCCCGGAGCAGAAATGAGGCCATCCGGCTGAAGAAGAAGATGGAAGGAGACCTCAACGAGATGGAAATCCAGCTCAGCCATGCTAACAGGCATGCTGCAGAAGCAACCAAGTCAGCACGTGGCCTGCAGACACAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=NA C2=0.846
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.4=100),PF0003816=Filament=PD(10.0=76.9),PF045827=Reo_sigmaC=PD(11.0=46.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCATGAAGAAAGCAAGACC
R:
CTTGATTTGTGTCTGCAGGCC
Band lengths:
302-2073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]