MmuINT0103398 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:49165899-49172203:+
Coord C1 exon
chr16:49165899-49166014
Coord A exon
chr16:49166015-49172010
Coord C2 exon
chr16:49172011-49172203
Length
5996 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
ACGTGTTACTCTGAAATCAGGGA
3' ss Score
4.04
Exon sequences
Seq C1 exon
GGAGCTCTGGAACGGAATGAAAGCAAGATCCTTCGTTTCCAGCTCGAACTCTCAGAGGCGAAGGCAGAGCTGGAAAGGAAGCTGTCGGAGAAAGAGGAAGAAGCAGAGAGGCTGAG
Seq A exon
GTATTTAGGATTACGTTGCTGAACAACAGCCATATACGTCAACGTCCCAGAATGAACAGAAGTCATTGCGGGGCTGCTTTCATGACGCCTGCCAGACCACAGTCAGGGACACTCGGTCTATCTTGACATTAGAGTTTCCCATTAAGTGCATCACTGTTTAAGGAGGAATACTTACCTATAGACATTGCCTGCTCTTGTGGTTTTTCTGTTCTCTGGTGTGGGGAGGACTGTATTAGGAGAGACAACCTGTGATGTGTGGGTCAGTGTCTGGCAAATCCCATTCAGGGGCAGTTAGGAAACTGATATGCTGAACCATAGAAGCAAGGCCAGACTGTTTGGCCCTGAGCTTTTAAGCTGGTGTTGGATCTGAGAGAAGGAAGGCCTGTCCCCAGGATAAAAGCAGAGTTAGGAAAGAGCAAGGCTGTTTGTTGAGACTGCAGAGTTTCACCTGCCCAGTCTCTGAGTGAGACAAATCTCCAGTCCCTGGAACTTTTCTTTACTTTTTGGCTGATAGCGTTAGACACTCTACTGCTTAGATTTTCAGGGAAGGGAAAAATGGCCCCACATGCCACAGAAGGTGGTCGGGGTGATCAGAAAGCCGATGCTGGAAAAGTGCGTCTTATTCTACAGATCTACAATAAACACTCACAGTTAGGGATGACTAAATTACCTCTTTGGATCTTTTGTTCCCTTAACTCAATGTTTCTCAACCTTCCCAGCGCTGCAGCCCTTTAATACAGTTCTTCATGTTGTGACCCCCCCAAGCATAAAATGATTTTCATTGATACTTCATAACTGTAATTATGCTATTGTTATAAAACGTAGTATAAAAATCTGTGGTTTCCACTGGTCTTAGGTGACCCTTGTGAAAGGGCAGCTTCACGTTCAGAGGGGTCACAACCCACCAGTTAAGAACCAATGCCTTAACCAAGGCCATAAGTCTGCAGAGAAGATCATATATTGGACCAAGGCTCAACTGGCCACTTGTTTTCAATGTCTTTGTTAAACTAACAAAACAAGCCAATGCCATGTTAATGCTGTCTGTTGAACTAGGCTTTTCCCCCATAGCTTGTTTTCTATGTAAACTTCCAGATGGCCAATATTTAGGGAGGCTTTGGAGCCAAGTTTATTCTTCTGTGTGCTCTGAGTTAACTCAACCCTTATTCACAAGCATTTTCCTGGAACTGGCAGTAGTGAAAAAATCTGATGCACTTATGAGTATCTGAAATAATTCTTGGGTAAAGGGGAAAACAGATAAACCCCTAATATTTGTGCCATTTCTGTACAAAAGGAACAAACATGATCATTTCCTTTGGTAGTTAAAAAAAAAAAAAAGCTTTATTTCAGGTAACGTCAAACCTCAGCTATAAATAAACCCTATGAGGAAACTGAATCCGCAGAGAGTCTGTGTCGCATCAGGTACATCTGAATGTCGGAGAACAGTTCCCCAATTATAATCATCAGTGCAAAGGAAGTCAGAGATCCAAACAGCTAAGGATAAGAGGAGAAAGCTGAAGGGATCATGAGCTGTGATGGTCGGGAAAAGGAAGGGGCGGCTGAGGCTCTGGCATGAACTCAGTATACGAGCGTTAGCTGATGACTCACAGTGGCTATAATCGGTACATCCATAAAGGACAGATGAGCATCTCACAAAACAGTGCGCACCACCCCAGACCCTCCCTGCACTGTACGAGTGCAGATGGCAGCATTCGGGTGATTCAGTCTGAATCCAGGGCCGGAACGAAGTGGAGAATACAAGGGGAAATGTACTCCAAGCATAAATTTCCAGGTAACGAAGAATATTAAGTGTAAATTACAGACCTCATAAAAGTATCATCTGAGGGCAGGATGATGTTGAAGGTCCTATGTTAACATAAATCGTGTCCATCACCACAAAAGACTGAAGATGTCTATTAAGAGAGGAAGCAGGAAGTGGAAGGAGCTAAGAAGACCAAAGAGAAGGCCAGGATTTTATAATACAGCGCCTGTGGATTCTCCCCATGTAGTCGCCACTGCTGAGTCTTCTGTGAGTCTGGTGAGGAGGAACTCTGAGTGAGTCCCGGAGAGAGCCCCATCGGTGAGGAAAAGTCCAAGCAGCTGGCCCGAGAGATATTGACTTCTAACAAATATTTGAGCTCTCAGTGTTGGCAGGATGCTTTGCGTAGTGTTGTAGTCTGGCCAGCCAAACTCTAGGATGTTTTGGATCTCTTTTTATGTCTTTATTTTATAAGATAGAAATAACTCAGTTTTTAAAAAGTTCCATTGGCTTGGTAATATTGTTATAATAGACAGCCTTTAAGAAATCTATGATAATCTAAACACAGAAGCAACAGCCAAGATACTGAAAGCCCTGAGTTTCTTCAAGGATAATGTTGTTCACTGATTTATTTATTTTTAATTTTTAATTTATTTTTGAGGCTTTCATACACGAATGCTGTGTTTACATAACTCCCATCCTCTCTTCTTCCTCCAATTCTTCCATTTTACCCCTTGAATTCAACTGCCTTTTAAATTCACGATTATTATCTCCTCCTCTCCTTTTCTTCATTATCATTATCATTACCAGACAATGACTGAATCTTCTGTAGCTGGAGATACAGGAAGTCCTGAGCTGCCCAATGTGCTGGGAATCAAACTTGGTTCCTCTGCAAAAGAAGCAACAGCTCATAAACCATTGGTCTATCTGTGTAGCTATCAGTTTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCAGCTATGCTTGGGGGTTTGTTTAACCCTGTTGAGTCATGTTGACTGTGTTGTAGTCTTCACTTAGGCCATTGTCATTGCCATTCTCCTTAAACCATAGAAGTTCTTGCTGCTCAGAAGCACTTATGAAGTTTTGCAGATAGCTACAGGAAAGCTAGCATTTGAAACCCCCTCAGTTTGCTGAAACAGGATGGATTTGTTGACAGAAGACTAACGGTAGGCCACAGAGGCTTCAGTGTTCCTGGTAAGGAGTGTTACCTGAAGCAAATCAGGGAGTTCCCCGTGGGGAAGCAGGGCAGCTTCTTCAGGACTTAAGTGATGTGGAGTATGCTTGTTATTAGTTTATTAGTTTGCAAAGGGTGCTGTCAAAATAAAAGAAAAACAAACAAAGAACAAAAAACAAAAATCCCACAGACTGGATGGTTTATACAATACAAATTCATGTTTTTCACAGTCTGGACACTATAAATTACAGATTGCAATGTAAACAAGGGAGTTTTCCCTAAGGCCTCTGTCCTCATCTTGAAGGCAGATGGTTGCTCTATATCCACATGGTATTTCTTCTGTGAGTATATATTCCTGCTGTCTTCTTACATCTTTGTGCTAGTGGAATAGGGCCCTTCCCCGGCAGCTTCATTTTACTTGCATTGCCTCTTTAAAGACACTTATATATGTCTGTGAAGCCTCATTCACAAGCACAGTATTGTGTTTCTGGGGCTTAAGGCTTTAGCATTATAATTTGGAGGCCACCCACATGATTTTTATATGTCTACAAGCTGACAGGACTCTAAACGGTGAGGTGTATGCACAATACCTAGGGATACGCACTAAATGTAAGACAAGGGACCAGCTTTAACACTAGGCTATGAAGTCAAAGTTACTTCCAATATTTTCTATAACTACTTCTGAGGCCCTTCCTTCCATAACGAAATGTGGTCATGTGAAGTAGAGTCCTCTACCTGAGAACCACTTGCAAACCCAGACATAACTCTACAAACAGTGGTGCTCTTCTGACTGACATGAGAGGTCTGGACACACTCTATGGCAATTCGGTGTGGAATCTAATTTGGACCCATAACAAACACATGTCTGCTGTTTGTTGTTACAGCCTCTATAAGGATAAAAAAAAATAAAAGAACTCTATCTTCTGCTTATCTATCTAGGACAAAGGTTCTGTTGCAATGGTGAGCTTCAGAGGACATGGATGTCTGATAGCTGTTGATATGTCTTGATGAACAACCATCAAATATGGAGGAGTTAAAACAGGAGAAGTTGGTGTTCTTTTTTGAAACTAGACTCTGAACTAGGGTAGAATGGGGAGTAAGTCACTAATCAAAGTTGTTCCAGAGACCAAAGTCTTTCCTACCCTGTGGTACTGCAGGTGAGGAGAAGTTGTAGATTCACACAGTCTGTGTGGTTTGACATCTTATGAGAGAGGCTTTTAATGGCCCACTGCACTACAGTCCCAATAAATGAATTAGCAGTTAGTCCTATGGTGCTGAACTATCTGCAAGTGTTGCCAAGGGAAAATTCCCAAGATTTGTTCAAATTTCTCTTTGCATTGTTGAAATCAAGGATATTAACTGAGCTGGTATCACTTTACAATTATAGTTTTGTACAGACCTTTTGTTTTTTACAAAAGGATATTGAAGTATTTCTATACTATATAGGATTTAGTTTTCTCAATTAACCACTGTCCTTCAAACTCCTAAGAAGATAAGGCAAAACAAGACAACACAAAATTCCATGCCATTATTGGAGGTTGTCTGTGCTGTAAAAAATTTTAATTCCAATCTAAGGTTTCTACCTCACCTTGATCATTTAGTTCCCAGATAAAAGACACACAACTTTTATTAGTTACAATAAGACTTAAACAGCACAAGAGCTTGGCATATATCTCTGTGGTATTAGAATCTACTTTCCTATCAATAACCCTGAGTTATTACTTACTGTGTTTCATCTGGGCTGCTCTTAACTCCAGTTGGCCACCCTCAGGGACACATTTTCATGAACTGACCTAATCTGTAGCAGGGTCTCCTTCCTTCTCACTTTCTCTCTTGTCCCGGTTCCCATCTGAACCCCAAAGCCTGGGAACCCTAAACCCCACCTATGTCTCTTCTGCCCTGGTATGGGCTGTCAGCATCTTTATTTACCAATCGGAAACAACTTGGGGGGGGGGCAAGTCCGATAGTGTCACTTGGGTCTATGTGTGGACTCTCTCATCTTGGAGCAACCAGGTCTTGGGGACCTGTACTTAGCATCACAATACACAGCAAAATCTCAACATGCCCATAGACCATTAGGGAATACAGCTGAATCTCTGGGCTTGTTTTAATCTCATCCTTGGTCTCTCTTTCCTGTGATGTTTAGACCTTTTTTTTTTTTTTTAACATTTGGAAGTAGTTTAAATATTATGGTTATCTAAAAGAACATATATTCTTCCTCTGTAGACTTCCAAGGTAATCTAGAATTTATCATCCTTGTCTTGTCTTGGTTAGGATTGCTATTGCTATGATAGAACTTCATGACCAAAGCAACTTGGGGAAGAAAAGATTTAGTTCACCTTACAGCTTCTAAGACTATCACTGAAGAAAGTAGGGGTAAGAACTCAGGACAGGGATTATAGTTAAAACTATGGAGGGATGCTACTTGCTAGCTTTCTCCTCATGGCTTTCTCAGCCTGCTTTCTTATACCAACCAGAACCACTAGCCAAAGGGTGACACCACCAACAGTGAGCAGTGCTTTCTCATATCAACTGTCAATAATAAAAGGAAATGCCTCACACCTTGCCCCTAGGCCAATCTGGTGGTGGCATTTTCTCAATTGAGGTTCTCTCTTCTATTCTACTTTGTGTAAAGCTGACATAAAACTACCCAGAACAATCTTTTAATGAGTCTTAGACAAAGCTAACACAGGACCCTTGAAATAATTCTAGTGTTTTTATAATTCTATGTCGAATCTAACCTCGAAGCCTTATTAGTCTGTTATAATGAGAACAGACTCATCAATCTAATGCCAACATTTCTGTTTATAAGATGAAAACCCTTTAAACTCATTTGTTTTTAACCTCTGAGAGTTATTTTTAATTTTAATGTGCTTCCCATAACTTGAAAATAAGAGATACCTGTTCCTAATTTGGGTGTGTGATGTTCTCCACACGTGTTACTCTGAAATCAG
Seq C2 exon
GGAGAAGCATCAGCAAGCTATGGGGTCCCTGCAGTCTAATTTGGATTTGGAAGCTTCCAGCAGAATTGAGGCCACCAGACTGAGGAAGAAGATGGAAGGGGACCTCAAGGAAATGGAGATCCAGCTTTGTGCTGCCAACCGGCAGGTGTCACAGATGACCAGAGCCTTGGGCCAGCTTCAGGGTCAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Myh15:NM_001166210:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: