BtaINT0097334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21361344-21363290:+
Coord C1 exon
chr10:21361344-21361480
Coord A exon
chr10:21361481-21363034
Coord C2 exon
chr10:21363035-21363290
Length
1554 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTCCGTGCTCCTTTGCCAGGGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGGCTGCTGGGGCTGCTGGAGGAGATGCGGGACGAGAGGCTGAGCCGCATCATCACCCGCATCCAGGCCCAAGCCCGGGGTCAGCTCATGCGCATTGAGTTCAAGAAGATCCTGGAGCGCAG
Seq A exon
GTGAGGCTGGAGGGAAAGGGAGACACACTCTCAGAAATGTAAGAGGTAGACAAGCAGAGCCCAGAGGTGTGGGCTGAAAGACCTAAGTTCAATCCTGGCTCCATCACTTACTAGCTGGTCTGGACAAGTGACTTGACCAGTCTGGGTCTCATTTTGAGTTCTTTTTAAAAAAAGAAAATTCCCTGTAGGAAATGAAAATTAAAACTCCAGTGAGATACCATTTTAAAACACTAGACTGTAGCCTGCCAGGCTCCTCCATCCATAGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTTCTTCTCCAGGCAATCTTCTGGATCCAGGGATCAAACTGGGGTCTCTCACATTGCAGGCAGAATCTTTACTGTCTGAGCCACCAGGGAAATGTGTGCAATCTCTTTGGAAAACAATTTATCATTTTCTTTGAAAGCTGAACAGTTACATCGCTTTCCACTCCTGAGTGCATTCCCACAAAGAAATACCTGCATGTGTTCACAACATGAGACAAAAATGAATCTTTATAGCAGCATTGGTCAAAATGGCAAAGATCTGGAAACAATTTGAATTTTCATCTGCAGGAGAACGGGTAAACAGTAGCATACTTATTTGGGGAATATTATCAAGTAATGAAAAGGAGGGGACTATAACTACATGGTACAAATTTGAGCCTTAAAATCATACTGCTGGGTTAACAGAAGCAAGTCACAGAAGGATACATATAGTGTGATGCAATTTTTATAAAACTCAGTAATAATTTTAAAATAGCATCCTCCTGCAATGCAGGAGGTGCACAGGAGACCCACCAATCCAGGGAAGTTCCCTGGGTTGGGAAGATACCTCATAGGAGGAAATGGAAACCCACTTCAGTATTCTTACCTGGAAAATTCCATGGACAGAGGAGCCTGGCAAGCTACAATCCATGGGGTCGCAAAGAGTTGGAAGTGACTGAGCACACACACACATTGTTTAAAAATACATACACATATGGTTTAAATATTTTTGAAAGAGTTAGGAAATGAAAAACACAAGATTCAAGGTAGTGACTACTTCTGGTGAAAGGACCGGAAAGGGGATGGAGTGTAGTCTACTAGTAGAATCAATGAAGGCAATGCTCTACTTCTTGTCTGGGTGATGAGTTCATAGATAAATCATTTTGCTTCATTCTTCATAACTTACACATACATTATATACATTCTTAAATGGAAAATACTATATTCTTAACATATTTGAGGTTCTTAGGAGATTAGAAACACTGAACACAGTAGAGGTGCTATAATTGGTCGCTTCCATAGCTACTACTACCCCAGAAAGGAAGATATAAACTGCCCTTTTGTTGAATTGATCAATTAATAAACATTTATAGACAACTCCATGTTCAGTGTGGTAATGTTGGGGTGGGGTTGCCTATCAAGCCTGCCAGAGCAGGTTCCTGCCCTCAGGTGCCCACACACTTGTTCAGATGTGCTGGGATCCCAGTGCAGCTGGCCCCATGACTGGAAAGTGCTCCTTCACAGTGCGGCTCCCTGCCTCCGTGCTCCTTTGCCAG
Seq C2 exon
GGATGCCCTGCTGGTAATCCAGTGGAATATTCGGGCCTTCATGGGGGTCAAGAACTGGCCCTGGATGAAGCTCTATTTCAAGATCAAACCACTGCTGAAGAGCGCAGAGACTGAGAAGGAGATGGCCAACATGAAGGAGGAGTTTGGGCGCATCAAAGAGACACTGGAGAAATCGGAGGCTCGGCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAACGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCAAGGCGGGGCTG
R:
ACCATCTTCTCCTCCAGCTCC
Band lengths:
345-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development