RnoINT0096508 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33618278-33621377:-
Coord C1 exon
chr15:33621241-33621377
Coord A exon
chr15:33618534-33621240
Coord C2 exon
chr15:33618278-33618533
Length
2707 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATTCCATTCTTTCCTGTCAGGGA
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGGCTGCTGGGGCTGCTGGAGGAGATGCGAGATGAGAGGCTGAGCCGCATCATCACCAGAATCCAGGCTCAAGCCCGAGGCCAGCTCATGCGCATTGAGTTCAAGAAGATGGTGGAGCGCAG
Seq A exon
GTGAGGCTAGCCGGAGGGAAAGTGTCAGATGAGAGAGGGTAGTTACAAGCATCTGGATTCAGATCCCGGCTCCACTGCTTGCTGTGATGTGGACAAGTGAGTCTACCGCAGTAGATTTCATTTTGAACTATTTTTGAAGGACTCCATGACACTTTAAAACACCAAATGAATTAAGAAGGCTGGCCTATTGTTACAGATGAGTAACTTAGTATAGGATTTCGGAAAGCATTTTATTCTCTTTTTAATGTACTTAGGTTGTTTTTTTTTAAGATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGACATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACCCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTCACCGCTGAGCCATCTCTCCAGCCCCAGGTTTTTTGTTTTTTGTTACACACACACACACACACACACACACACACATATATATATATATGATTTATTTATTTATTGGGGTAATGCCATGTCACATATATGAAGGTCAGAGGACAGCCCACAGAGTTGGTTCTCTATACTGAGTGAGTGAGTGAGTGAGTGAGTGAGACAGGGTTTCTCTGTGTAGTCCTGGTTGTTCTTGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTCTTTTGTCTCCAGAATGCTGAGCTTAAAGGCCCATGCTGCCACAGCTGACTTTTTTTTTTTTTTTGACTGTTTGTGGTTGCTCTACTATGTGGGTCCCAGAGATATACTTGAAGCCGTCAGACACCTTCTACCTGCTGAGCCACCTCAAAGGCTCTTATTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCTCCCTCCCTCCTCTCCCTCTCTCTCTTTGAAATTACCTCATGTTTGTGCTCCTTGTGTGTGTGCATGTGTCCGTGGCATGTATGCACATGTGTCCGTGCATGAGGTGTGGTGCATGTGGAGGTCAGAGGATACCGCGCAGGCCCAGATCTCTGCTCCTACTGTGTTCAGTCACAGGGACTAGACTCTGGCTCTGATGCTTGACAGTGAGCGCCTTTGCCTGCTGAGCCATCCGGCCAACCCTGCTCTCTTCTTTGAAGTTGAGCTATCACATACTTTTAGTTTTGTCAGGTTTTTGACGAATTCATCCGTGCATACAATACTCAGTGATCATACTCACCTCGTTGCCCCCCCCCCACTCCTGCTGGCCCCTTCTCATTCCTAACCAATTCCCTCTGCTCCTGTGTCTTGACTTTTTATCACCACATACTTCCCATTCTGTTCCTGGATACAGTGCCACAGAGAGACCCCTTCACGTGTACACCAGGAGACAAAAGAAAAGAAAAAAAAATCAATCTTCATGGAAGCCTTACTCTTAAGAGCAGGGACCTAGAAATAACCTCAGCTTCCATATAAAAGAGAGTGGCTAAATAGTATTCCAGCCATTTGATGGAATACTATGTAACCTTGAAAACGGCTACACTATAGGAACATGGTATAATACACTTGACCTTTAAAAGCCCGTCACTAAGGGAATAAAAGCAATTCATACAAGCAGACTTACAGTATGACACACCATTCATCTACGAAGCTCGGAAATCAGGAAAACAGAAGTGCATTGTTTAAAGTGACCTTTGTACATTGTTTAAAACACTTTTTTTGGAAGGAGCAAGAAAAATCAGGAACTGAGGAGATGGCTCAGATAGGCGTTTATGCTGCAAACATGAGCTCTTGTGCTACTTCTCCAGCCACATGAAGAGCCAGGTGCGGCTGCAAGACCCCGTGGGGCAGAGAGAGCAGGGTCGGGAGAGCTTGCTGCTACCAGCCTAACAGAAACACAAGCCCCAGGTTCAGCGCCTTGTGGCAGAGAAGGACAGAAGGAAACACCTAATGTTCTCCTCTGGTCGCTAGGCACACGTGGACATGTATACTCACATGTGTGTGCCTGTATACACCACACGCACAAATTTAAATTAAAAAAAAGGAAAACTGAGATAGGTGTCTCACTACGTATCCTGGCAGGGCTGGCTTGGAACTGACCAGGTAGACCAGGCTGACCTTGAACCACAGCGATGCACCTGCTTTTGCCCCTGAGTGCTGAATGTGGGCATAAAAAAAATGTGCACTACCACACCCAGCCAAAAAGAATAATTTTTTTTAAAGTATGAAAATGGAAACCAAGTTGGATAGAGGTAGCTGTTTCTAGTAGAGGCCCAGGGAAGGTGAAGAGAGGAGCCCACTTCCAGCTCAGTGGTTGAATGTTCCGCTCCTGCTCTGCTGGGGGGCTCCCGAGCAGTTATTCTGTTTTGAAATTTCATTATATATATGAATATGTATCAATCTATCTATATATTTATATATGTATGTATATATCTCACAGACGTTTTGAGATGTAAGATGCTACATAGTCTGTATTTGAAGGTACCCTGAACGTTGAACATGGTAGACCTCTCTGTGGCTTCCATTGCTGTTGCTGTCCCAGTAGGGGAATTCGTACCACGCTTTTGTTGAAGTCATGGGAGTGAGGCTACAATGCACCTTGCACCTGGAAACTTGCTCAGACAGAGGAGGCCAGCGCAACTGGTCCCATGACTGAGGAGACCCCTTTCTAGAGTTCTTTCTGATTCCATTCTTTCCTGTCAG
Seq C2 exon
GGACGCCCTGCTGGTTATCCAGTGGAACATCCGCGCCTTCATGGGGGTCAAGAATTGGCCGTGGATGAAGCTCTACTTCAAGATCAAGCCGCTGCTGAAGAGCGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAGGAGTTCGGGCGAGTCAAAGATGCACTAGAGAAGTCTGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.9=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]