GgaINT0132874 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:12589-12961:+
Coord C1 exon
chr19:12589-12725
Coord A exon
chr19:12726-12834
Coord C2 exon
chr19:12835-12961
Length
109 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
TCTGAGTGTTCCCATCATAGGGA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTCTTCTTCAAGGCTGGGCTGCTGGGGCTGTTGGAGGAGATGCGAGATGAGCGCCTCTCCCTCATCATCACCCGCATCCAAGCTCAAGCCCGGGGCCAGCTCATGCGCATAGAGTTCAAGAAGATCCTGGAGCGCCG
Seq A exon
GTGAGATGGGGGTAGCTCCTCCTACCAGGGATGGAGCTCTCATGCTCTCATGCTCAGCTCCACTACAGAGGGCTCGGGTGGTGGCATCATCTGAGTGTTCCCATCATAG
Seq C2 exon
GGATGCACTCTTGGTAATCCAATGGAATATCCGTGCCTTCATGGGGGTGAAGAACTGGCCCTGGATGAAGCTCTACTTCAAGATCAAGCCCCTGCTGAAGAGTGCTGAGACTGAGAAGGAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCTTCAAGGCTGGGCTG
R:
GTCTCAGCACTCTTCAGCAGG
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]