BtaINT0097355 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64897570-64898113:+
Coord C1 exon
chr13:64897570-64897708
Coord A exon
chr13:64897709-64897994
Coord C2 exon
chr13:64897995-64898113
Length
286 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
TCACCTGTGTGTCCTGCCAGGTG
3' ss Score
11.78
Exon sequences
Seq C1 exon
CATGCCATGGACATCCTGGGCTTCAGCGTGGAGGAGAAGTGCGCCTGCTATAAGATCGTGGGGGCCCTCCTGCACTTCGGCAACATGAAATTCAAGCAGAAACAGCGGGAGGAGCAGGCTGAGGCTGACGGCACTGAGA
Seq A exon
GTGAGGCGCCCTGACCCTGACCTGACCTGGTCATTCTCTTGACCCTGATCCCAACCTCCAGTCCGTGACTGTGATCCCTGAGCCTTGTCTGCAACCTTTGACCTCAGTCTGGCCCTGATTTGTAAATTGTGATTACTCAACTCCAGCCCCTCACCCTTCTGAGCTGTACAGTTTGCTGACCCTGACCTCTCCCAACCTCCCTCTCCTAACCCTAAGTAGAGACCAGTAGAGCCCCCAAAACCCCTAGTCTTAGCCGCCTCCTCATCTCACCTGTGTGTCCTGCCAG
Seq C2 exon
GTGCTGACAAGGCTGCCTACCTGATGGGGGTCAGCAGCGGGGACCTCCTCAAAGGTCTTCTGCACCCCCGAGTGCGTGTGGGGAATGAATATGTGACCAAGGGTCAGAGCGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCATGGACATCCTGGG
R:
CTCCACGCTCTGACCCTTGG
Band lengths:
255-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development