MmuINT0103608 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155446123-155446635:+
Coord C1 exon
chr2:155446123-155446261
Coord A exon
chr2:155446262-155446516
Coord C2 exon
chr2:155446517-155446635
Length
255 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
CAAGCCATGTTCCCTGCCAGGTG
3' ss Score
7.36
Exon sequences
Seq C1 exon
CATGCAATGGATATCCTGGGCTTCAGTGTGGATGAGAAGTGTGCCTGCTATAAGATCGTGGGTGCTCTCCTGCACTTTGGCAACATGAAGTTCAAACAGAAGCAGAGAGAGGAACAGGCTGAGGCAGACGGCACTGAGA
Seq A exon
GTGAGGACCTCTAACCCCAGTCTGACCTGGCCTTTACCCTGGAAACTTTCCCAGACATTCTCCTTGACCCTTGCCAATAATCTTTCATCTCAGTGTTCTCTGTTCCTGTCTGAATTCTAGACCCTCCTAAAGGTGACAATCTTCAGGCCCCGATTCCTCTTAACCTTCCTCTTTAAACCCCCAAGATGTGACAACAGACCCCTGACCCCCAAGTGCCCACGTTGTTGCCCTTATCCAAGCCATGTTCCCTGCCAG
Seq C2 exon
GTGCGGACAAGGCTGCCTACTTGATGGGTGTCAGCAGCGGGGACCTCCTCAAAGGTCTCCTGCATCCCCGGGTTCGTGTGGGAAATGAGTATGTTACCAAGGGCCAGAGTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAATGGATATCCTGGGCT
R:
CACACTCTGGCCCTTGGTAAC
Band lengths:
252-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: