RnoINT0096551 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151135210-151135728:+
Coord C1 exon
chr3:151135210-151135348
Coord A exon
chr3:151135349-151135609
Coord C2 exon
chr3:151135610-151135728
Length
261 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
3' ss Seq
CAAACCGTGTTCCCTGCCAGGTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
CATGCAATGGACATCCTGGGCTTCAGCGTGGATGAGAAGTGCGCATGCTATAAGATCGTGGGCGCCCTCCTGCACTTTGGCAACATGAAGTTCAAACAGAAGCAGAGAGAGGAACAGGCTGAGGCAGACGGCACTGAGA
Seq A exon
GTGAGGACCTCTAACCTCAGCCTGACCAGGCCTTTACCCTGGATGCTTACCCATAATTCCCATTAACCCCTGTTTATAATCTTTGATCTCAGTGTTCTCTGTTCCTGTCTGAATTCTAGACCCTCCTAAGGGTGACAATCTGCAGGCCCTGATTCCTCCTAACCTTCCTCTTCAAACCCCCAGCCTGTGACAACCCCTGACCCCCCAGGGGCCCACACTGTTGACCTCCCTCTTCCTTATCCAAACCGTGTTCCCTGCCAG
Seq C2 exon
GTGCCGACAAGGCTGCCTACCTGATGGGAGTCAGCAGTGGAGACCTCCTCAAAGGTCTTCTGCACCCCCGGGTTCGTGTGGGAAACGAGTATGTGACCAAGGGCCAGAGTGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAATGGACATCCTGGGC
R:
CACACTCTGGCCCTTGGTCA
Band lengths:
252-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]