BtaINT0097381 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64911375-64911749:+
Coord C1 exon
chr13:64911375-64911545
Coord A exon
chr13:64911546-64911644
Coord C2 exon
chr13:64911645-64911749
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
CACCGGCTGGCTGCTTGTAGGTG
3' ss Score
6.59
Exon sequences
Seq C1 exon
GCAGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACAAGCACACACCTGGAACGGATGAAGAAGACGCTGGAGCAGACAGTGCGGGAGCTGCAGGCCCGGCTGGAGGAGGCAGAACAAGCCGCCCTCCGGGGCGGGAAGAAGCAGGTGCAGAAGCTGGAGGCCAAG
Seq A exon
GTGTGTGCGGCCCGCCTCCCAGCCTGCTGCCCTGGCGGGTGGGTCAGCCCCGGGGAGGGCAGGCCAGGGGCACCAGGCCCACCGGCTGGCTGCTTGTAG
Seq C2 exon
GTGCGGGAGCTGGAGGCCGAGCTGGACGCGGAGCAGAAGAAGCACGCAGAGGCCCTCAAAGGGGTGCGGAAGCACGAACGCCGGGTCAAGGAGCTCGCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.943
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGATGAAGAAGACGCTGG
R:
CTCTGCGTGCTTCTTCTGCTC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development