GgaINT0010732 @ galGal3

Intron Retention

Gene

ENSGALG00000003157 | MYH7B

Description

NA

Coordinates

chr20:2585546-2586020:-

Coord C1 exon

chr20:2585850-2586020

Coord A exon

chr20:2585651-2585849

Coord C2 exon

chr20:2585546-2585650

Length

199 bp

Sequences

Splice sites

5' ss Seq

AGGGTGAGC

5' ss Score

7.75

3' ss Seq

ATGGCCTCTCCTGCCTGCAGGTG

3' ss Score

11.18

Exon sequences

Seq C1 exon

GCTGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACGAGTGCACACCTGGAGCGGATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGATGCGCCTGGACGAAGCAGAGCAGATTGCTCTCAAGGGGGGCAAGAAGCAGATCCAGAAGCTGGAGGCCAGG

Seq A exon

GTGAGCCAACAGGAGCAGAACCCTGGTGGCACTGGGCTTTGCAGGGCTGGCCCCAAGGACTTGTAAGCCTGGAGCCATCTCCCAGCCTTTGTCTGGAGTGGCTCAGCCTTGGCTGCAGCTGCTCTGAGCTGAGGAAGTAGCTGGCACTGGCTGTCCCTCCCTGGGGTCCTGTGGCTGAGATGGCCTCTCCTGCCTGCAG

Seq C2 exon

GTGCGTGAGCTGGAGGGAGAGCTGGATACGGAGCAGAAGAAGATGGCTGAAGCCCAGAAAGGCATTCGCAAGTATGAGCGGCGGATTAAGGAGCTGAGCTACCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000003157:ENSGALT00000004997:42

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.614 A=NA C2=0.586

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(21.3=100),PF0003816=Filament=FE(22.0=100),PF041569=IncA=PD(24.0=54.4),PF045827=Reo_sigmaC=FE(40.0=100),PF129622=DUF3851=PD(15.0=15.8),PF0026115=Tropomyosin=PU(61.5=70.2),PF052669=DUF724=PU(27.7=49.1)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(12.9=100),PF0003816=Filament=FE(13.3=100),PF045827=Reo_sigmaC=PD(7.9=31.4),PF0026115=Tropomyosin=PD(35.4=65.7),PF052669=DUF724=FE(33.7=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000004988