RnoINT0096578 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151149045-151149405:+
Coord C1 exon
chr3:151149045-151149215
Coord A exon
chr3:151149216-151149300
Coord C2 exon
chr3:151149301-151149405
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
AACCCCGTCCTGACCCGCAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GCAGCCATGATGGCTGAGGAGCTGAAAAAGGAGCAGGACACAAGTGCACACCTCGAACGGATGAAGAAGACCCTGGAACAGACAGTGCGGGAGCTGCAGGCCCGCCTTGAGGAAGCAGAGCAGGCCGCACTCCGGGGTGGGAAGAAGCAAGTGCAGAAGCTGGAAGCCAAG
Seq A exon
GTGTGTGCAGCCTTACCAGTCCCTCTCCCCTGCACGGCTGACTAGGGCTGGCTGGGCTAGCAGGGAACCCCGTCCTGACCCGCAG
Seq C2 exon
GTGCGGGAACTGGAGGCAGAGCTTGACGCAGAGCAGAAGAAGCACGCTGAGGCCCTCAAGGGTGTGCGCAAACATGAGCGCAGGGTCAAGGAGCTTGCGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.943
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGCAGGACACAAGTGC
R:
GTCAAGCTCTGCCTCCAGTTC
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]