GgaINT0010732 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2943641-2944115:-
Coord C1 exon
chr20:2943945-2944115
Coord A exon
chr20:2943746-2943944
Coord C2 exon
chr20:2943641-2943745
Length
199 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
ATGGCCTCTCCTGCCTGCAGGTG
3' ss Score
11.18
Exon sequences
Seq C1 exon
GCTGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACGAGTGCACACCTGGAGCGGATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGATGCGCCTGGACGAAGCAGAGCAGATTGCTCTCAAGGGGGGCAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
Seq A exon
GTGAGCCAACAGGAGCAGAACCCTGGTGGCACTGGGCTTTGCAGGGCTGGCCCCAAGGACTTGTAAGCCTGGAGCCATCTCCCAGCCTTTGTCTGGAGTGGCTCAGCCTTGGCTGCAGCTGCTCTGAGCTGAGGAAGTAGCTGGCACTGGCTGTCCCTCCCTGGGGTCCTGTGGCTGAGATGGCCTCTCCTGCCTGCAG
Seq C2 exon
GTGCGTGAGCTGGAGGGAGAGCTGGATACGGAGCAGAAGAAGATGGCTGAAGCCCAGAAAGGCATTCGCAAGTATGAGCGGCGGATTAAGGAGCTGAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0003816=Filament=FE(21.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0003816=Filament=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGCTGAAGAAGGAGCA
R:
TAATCCGCCGCTCATACTTGC
Band lengths:
245-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]