BtaINT0097382 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64911645-64911927:+
Coord C1 exon
chr13:64911645-64911749
Coord A exon
chr13:64911750-64911831
Coord C2 exon
chr13:64911832-64911927
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AATCCCCTTTGCCTGCCCAGGCT
3' ss Score
6.82
Exon sequences
Seq C1 exon
GTGCGGGAGCTGGAGGCCGAGCTGGACGCGGAGCAGAAGAAGCACGCAGAGGCCCTCAAAGGGGTGCGGAAGCACGAACGCCGGGTCAAGGAGCTCGCGTACCAG
Seq A exon
GTGGGTAACCAGGACCACCTCGAAGGGTGGCCCTAGGGCTCGGCTGCTTTGGGCAAGACCTGAATCCCCTTTGCCTGCCCAG
Seq C2 exon
GCTGAGGAGGACAGGAAGAATCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAACGTCAGTTTGAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.688
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAAGAAGCACGCAGAG
R:
CGCCTCTTCAAACTGACGTTT
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development