HsaINT0107911 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:35001245-35001526:+
Coord C1 exon
chr20:35001245-35001349
Coord A exon
chr20:35001350-35001430
Coord C2 exon
chr20:35001431-35001526
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AGTCCCCCTTGCCCGCCCAGGCC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTACGGGAGCTGGAGGCTGAGCTTGATGCAGAGCAGAAGAAGCACGCCGAGGCCCTTAAGGGCGTGCGCAAGCATGAGCGCCGTGTCAAGGAGCTCGCATACCAG
Seq A exon
GTGGGCGACAGGGTCTCCCTGGGGAGTGGCCCTGGAGCTGGCCCAGCCCAAGCAAGCCCTGAGTCCCCCTTGCCCGCCCAG
Seq C2 exon
GCCGAGGAGGACAGGAAGAACCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.732
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=WD(100=42.6),PF117273=ISG65-75=PU(46.7=45.7),PF0157614=Myosin_tail_1=PU(46.2=38.3),PF0026115=Tropomyosin=PU(38.9=37.2),PF150351=Rootletin=PU(43.6=36.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(28.7=100),PF096025=PhaP_Bmeg=FE(25.4=100),PF117273=ISG65-75=FE(27.4=100),PF150701=GOLGA2L5=FE(27.9=100),PF150351=Rootletin=FE(39.7=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGAGCTTGATGCAGAG
R:
GCGCTTGTAGCTCTTGACCTT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development