GgaINT0010733 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2585196-2585650:-
Coord C1 exon
chr20:2585546-2585650
Coord A exon
chr20:2585292-2585545
Coord C2 exon
chr20:2585196-2585291
Length
254 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GGGGTGGGGGGCACTTGCAGACT
3' ss Score
0.31
Exon sequences
Seq C1 exon
GTGCGTGAGCTGGAGGGAGAGCTGGATACGGAGCAGAAGAAGATGGCTGAAGCCCAGAAAGGCATTCGCAAGTATGAGCGGCGGATTAAGGAGCTGAGCTACCAG
Seq A exon
GTATGGCAGCACTGGGCGCAGCTCCAGCCCCATGCTTCTCCTCGTGTTACTCAACCCATTATCCACCCCCTGCTCTGTGTTGGTGGCATTGCTTCCGCTGCGGACTGGGACACAACAGGGGCAGCCATGTGGCATGGAGTTGTTGGATGCAAAGGGCCCCTGCGAGCACGGGGCTGCCTTGGGCTGGGGCGGCAGGGCTGAGGGGTCTTGCCTAGGATGGGGGCCCTGCTGACTGGGGTGGGGGGCACTTGCAG
Seq C2 exon
ACTGAGGAAGACCGGAAGAACCTGACCCGGATGCAAGATCTGATTGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=NA C2=0.594
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.9=100),PF0003816=Filament=FE(13.3=100),PF045827=Reo_sigmaC=PD(7.9=31.4),PF0026115=Tropomyosin=PD(35.4=65.7),PF052669=DUF724=FE(33.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.8=100),PF0003816=Filament=FE(12.2=100),PF052669=DUF724=FE(30.7=100),PF150351=Rootletin=PU(39.7=84.4),PF127182=Tropomyosin_1=PU(39.1=84.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGCTGGAGGGAGAGC
R:
CCTCCTCAAACTGGCGCTTG
Band lengths:
196-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]