RnoINT0096579 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151149301-151149583:+
Coord C1 exon
chr3:151149301-151149405
Coord A exon
chr3:151149406-151149487
Coord C2 exon
chr3:151149488-151149583
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AGAGCCCTTTGCTTGTCCAGACT
3' ss Score
3.73
Exon sequences
Seq C1 exon
GTGCGGGAACTGGAGGCAGAGCTTGACGCAGAGCAGAAGAAGCACGCTGAGGCCCTCAAGGGTGTGCGCAAACATGAGCGCAGGGTCAAGGAGCTTGCGTACCAG
Seq A exon
GTGGGTGGTGGGGTCCACCCCGGGAGGTGGCACTGGAGCTAACCCTGTCCAGGCAAACCCTGAGAGCCCTTTGCTTGTCCAG
Seq C2 exon
ACTGAGGAAGACAGGAAGAACCTGGCTCGCATGCAGGACCTAGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGTCAGTTTGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=0.688
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGAGGCAGAGCTTGAC
R:
GCTCTTGACCTTGCTCTGCAG
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]