HsaINT0107911 @ hg19

Intron Retention

Gene

ENSG00000078814 | MYH7B

Description

myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]

Coordinates

chr20:33589048-33589329:+

Coord C1 exon

chr20:33589048-33589152

Coord A exon

chr20:33589153-33589233

Coord C2 exon

chr20:33589234-33589329

Length

81 bp

Sequences

Splice sites

5' ss Seq

CAGGTGGGC

5' ss Score

8.07

3' ss Seq

AGTCCCCCTTGCCCGCCCAGGCC

3' ss Score

6.99

Exon sequences

Seq C1 exon

GTACGGGAGCTGGAGGCTGAGCTTGATGCAGAGCAGAAGAAGCACGCCGAGGCCCTTAAGGGCGTGCGCAAGCATGAGCGCCGTGTCAAGGAGCTCGCATACCAG

Seq A exon

GTGGGCGACAGGGTCTCCCTGGGGAGTGGCCCTGGAGCTGGCCCAGCCCAAGCAAGCCCTGAGTCCCCCTTGCCCGCCCAG

Seq C2 exon

GCCGAGGAGGACAGGAAGAACCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000078814-MYH7B:NM_020884:42

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.911 A=NA C2=0.697

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=PU(31.5=97.1),PF096025=PhaP_Bmeg=PU(27.9=97.1),PF131661=AAA_13=PU(28.1=97.1),PF0003816=Filament=PU(31.2=97.1),PF060097=Laminin_II=PU(36.8=71.4),PF150701=GOLGA2L5=PU(22.5=71.4),PF117273=ISG65-75=PU(28.3=91.4),PF044267=Bul1_C=PU(27.2=71.4),PF150351=Rootletin=PU(2.6=5.7)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(28.7=100),PF096025=PhaP_Bmeg=FE(25.4=100),PF131661=AAA_13=FE(25.6=100),PF0003816=Filament=FE(28.4=100),PF060097=Laminin_II=FE(45.6=100),PF150701=GOLGA2L5=FE(27.9=100),PF117273=ISG65-75=FE(27.4=100),PF044267=Bul1_C=FE(33.7=100),PF150351=Rootletin=FE(39.7=100)

Main Inclusion Isoform:

ENSP00000391939