BtaINT0097414 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75101824-75102423:-
Coord C1 exon
chr5:75102175-75102423
Coord A exon
chr5:75102037-75102174
Coord C2 exon
chr5:75101824-75102036
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGTGCCTGCCTGTCTCCCAGCTC
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTCACCGATATGAGGAAGAAGATGGATGACAGCGTGGGGTGCCTGGAGACGGCTGAGGAGGCCAAGAGGAAGCTGCAGAAGGACCTGGAGGGGCTGAGCCAGTGCTATGAGGAGAAGGTGGCTGCCTACGACAAGCTGGAGAAGACCAAGACGCGGCTGCAGCAGGAGCTGGATGACCTGCTCGTGGATCTTGACCACCAGCGGCAGAGCGTCTCCAACCTGGAGAAGAAGCAGAAGAAGTTTGACCAG
Seq A exon
GTGGGTGCCGTCAGTGCATCAGTCCCTCCTCCCGTCCTTCTGCAGACACCCTGCCTCGGGCAGAGGCTGTTGTCTGTCAGGCTCTGACCCTTTCCGAGAGCCCGTTGCTCACACTCATGGTGCCTGCCTGTCTCCCAG
Seq C2 exon
CTCCTGGCCGAGGAGAAGACCATCTCTGCTAAGTATGCGGAGGAGCGTGACCGGGCAGAGGCGGAGGCCCGGGAGAAGGAGACCAAGGCGCTGTCTCTGGCCCGGGCGCTGGAGGAGGCCATGGAGCAGAAGGCAGAACTGGAGCGGCTCAACAAGCAGTTCCGCACCGAGATGGAAGACCTCATGAGCTCTAAGGATGACGTGGGCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.803
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=FE(64.6=100),PF078886=CALCOCO1=FE(45.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF078886=CALCOCO1=PD(37.9=97.2),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGGATGACAGCGTGGG
R:
GAGATGGTCTTCTCCTCGGCC
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]