HsaINT0107981 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36289085-36292234:-
Coord C1 exon
chr22:36291986-36292234
Coord A exon
chr22:36289298-36291985
Coord C2 exon
chr22:36289085-36289297
Length
2688 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GGTGCCCACCTCTTTCCCAGCTC
3' ss Score
5.64
Exon sequences
Seq C1 exon
GTGGCCGACATGAAAAAGAAGATGGAGGACAGTGTGGGGTGCCTGGAAACTGCTGAGGAGGTGAAGAGGAAGCTCCAGAAGGACCTGGAGGGCCTGAGCCAGCGGCACGAGGAGAAGGTGGCCGCCTACGACAAGCTGGAGAAGACCAAGACGCGGCTGCAGCAGGAGCTGGACGACCTGCTGGTGGACCTGGACCACCAGCGCCAGAGCGCGTGCAACCTGGAGAAGAAGCAGAAGAAGTTTGACCAG
Seq A exon
GTGTGTGGCCGTTGGCCCCATCCTTTGCATTTCCTCTCCTTCAAGCACTGAGTCCAAAGCAAAGGGCCCATCAGAGAAAGCCTGGGCTCCCTCAGGGTCTCGCCGGGGAGGGGCCGTGCGGGGCCAGTGCTTAGAGGACCCTCAGGCTCTGGCTTGTTGAGGGTCCCAGGGAGAAGGCCAGCGGAAGAGGGCGTCTTCATGCGATGGGTTGAGGAGTGACTTTTCCTTTCTGATTTTTTACATTTTTCAGATTTTCTCTAATGAACTGGTTTGACTGTCTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCCGGTTTTCCTAGGCAGAGGACCCTTTGGCCTTCCGCAGTGTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAAGAGCATGCTGCCTTCAAGCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTTAACCCTGAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCACAGATCAACAAGATCCCAAGGCAGAAGAATTTTTCTTGTACACAACAAAATGAAAAGTCTCCCATGTATACTTCTTTCTACACAGACACGGCAACCATCCGATTTCTCAATCTTTTCCCCACCTTTCCCCCCTTTCTATTCCACAAAACCGCCATTGTCATCATGGCCCGCTATCAATGAGCTGTTGGGTACACCTCCCAGACGGGGTGGTGGCCTGGCAGAGGGGCTCCTCACTAACCAGTAGGGGCGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCTGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGATGGGGTGGCTGCCGGGCGGAGACGCTCCTCACTTCCCAGACGGGGTGGCCGCCGGGCGGAGGGGCTCCTCACCTCTCAGACGGGGCGGCTGCAGGGCGGAGGGGCTCCTCACCTCTCAGACGGGGCGGTTGCCAGGCAGAGGGTCTCCTCACTTCTCAGACGGGGCGGCCGGGCAGAGATGCTCCTCACCTCCCAGACGGGGTCGCCACTGGGCAGAGGCACTCCTCACATCCCAGACGGGGCGGCGGGGCAGAGGCGCTCCCCACATCTCAGACGATGGGCGGCCGGGCAGAGACGCTCCTCACTTCCTAGATGTGATGGCGGCCGGGAAGAGGCGCTCCTCACCTCCTAGATGGGATGGCGGCCGGGCAGAGACACCCCTCACCTTCCAGACTGGGCAGCCAGGCAGAGGGGCTCCTCACATCCCAGACGATGGGCGGCCAGGCAGAGACGCTCCTCACTTCCCAGATGGGGTGGCGGCCGGGAAGAGGCTGCAATCTTGGCATTTTGGGAGGCCAAGGCAGGCGGCTGGGAGGTGGAGGCTGTAGCAAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCTCCATTGAGCACTGAGTTAAAATCACTTTAATTATCATTATATCATTACATTATTATAATTATTTAATTATAGTTTGGGTTTTTTTAAAATAGTTTGGGTTTTTTTTTTTTTTTTTTTTGGAGACTGTCTCTGTCTGTTGCCCAGGCTGGGGTGCCGTGGTGCAACCACAGCTCAAGTGATCCTCCCACATCAGCTTCCTGAGTGGCTGGGACCACAGGCGTGCACCACCACCACACCCAGCTAATTTTTAGATGTTTTTCATAGTGACAGGGATCTCACCATATCGCCCAGGCTGGTCTCAAACTCCTGCGGTTTGACTGTCTTTTAAACGATTTATTTATGCATTCATATCACTTCCTTATTCCAAAAGATCTGAGAGCAGCTGAGGGGGATGTGGACTCGGGGGCAGGATAGAACAGTAGAAGACATCGGGCAGCCAACTGTGGTAGCCGGATCCGGCCCCTGCATTTTGTAGGGAACGATAGACTGAACACAGCCACGCTCCATGGTTCTCATGTTGTCTCTGGTTGCTTTGTGCTGTGGTAGTGGGGTTGAGCCATTGCTGCAGAGACTGTAGGGCCTGCATACTCTAAAGAATGCACTATCTGGCCCTTTAGGAAATGGTCAGCAACCCATGGGATAATTAAGGTTTGGGCCAAAAGGAAGGGAAGGTGGGGAAATAGGATAGAGCCAGGTGGGTGCACACAGAGAACAGATGCCAGGGGACAGCAGCTGTCATTAGAGAAGACCACAAATGGGGTTCAGGCTTCTTGGCAGCCAGCTTGGCATTCACTTCGTGAAAAGTGCCAACCAAATGCCAGCTGTGGTTCAGGAGAACCAAAGCTCTTACAGGTTTGGAGGGCTCTCATGGAAGGGGCAGCGTGCCATAAAGGGTTGCGATTAGTAAGTGATGAAAATTAAACAGACGTTACAACATGGTGTTCGCAGTAGTGCCTGCTCCAGTCGGCAGTCATCCCATCATGAGGATGCACGGGACTGTGTGTATTGTCCTGGGCACAGCCCTGGGCCTGTGCTTCCTAGGCCTGCTCCTCTCCACCGTGGCCTCTGGGCTCCTCCTTCCCCAGGGAGCTTAGGCCCAGCTGCCCTGCCCTGCTGGGGGCCGTAGCTCTGAGCCTCATGGTGCCCACCTCTTTCCCAG
Seq C2 exon
CTCCTGGCGGAGGAGAAGACCATCTCTGCCAAGTATGCAGAGGAGCGCGACCGGGCTGAGGCGGAGGCCCGAGAGAAGGAGACCAAGGCTCTGTCGCTGGCCCGGGCCCTGGAGGAAGCCATGGAGCAGAAGGCGGAGCTGGAGCGGCTCAACAAGCAGTTCCGCACGGAGATGGAGGACCTTATGAGCTCCAAGGATGATGTGGGCAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100),PF078886=CALCOCO1=FE(43.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF078886=CALCOCO1=FE(37.2=100),PF115593=ADIP=PU(37.2=59.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development