GgaINT0105105 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53814118-53815072:+
Coord C1 exon
chr1:53814118-53814366
Coord A exon
chr1:53814367-53814859
Coord C2 exon
chr1:53814860-53815072
Length
493 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTAATGCTGTGCTCTCGTAGCTC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GCAGTAGAGGCCAGAAAGAAGATGGATGATGGTCTGGGCTGCCTTGAGATAGCAGAAGAAGCCAAGAAGAAGCTGCAAAAGGACTTGGAGAGCTTAACCCAGCGTTATGAGGAAAAGATAGCCGCATATGACAAGCTGGAAAAAACAAAGACCCGCCTGCAGCAAGAGCTGGATGACATCGCTGTGGACCTGGATCATCAGCGCCAGACAGTTTCCAACCTAGAGAAGAAGCAGAAGAAGTTTGATCAG
Seq A exon
GTATGACTTCAGTCTCAATCCGTTCAGTGTAGGTACATCTGACTTGGCAGATTTGCCTCTAAGAATATCTAAACAGTGCTGTTTGGAGAATGCATGTTTATTTCTGAACTGAGGTATAGCATATGAAGTGGAGAGAGAAGCTGTCATAGAGGGAAACTTGTTTTGTTTCATGCACAGGAAGTTTAGTGATGCACCTTTTCCCAAAGGGCTAACATTTATATTGACAACAACAACAAGTTGTAAATGCTTGCTGCAGTTTTTGAGGGGCTGTTGGAATTGATACATTGGATGTCTGGGGAATCAGAGGTTTATTCACGTGGGGTCAGCACATTATTGAAGATGGGATGGTATGCATTCTCTGAAGACAGGTTTTCTTGATCCTTTCTGTCCGTGGCAGAATGCTACTTAGAAGGCAGTAACAGAAAAGGTGTATGTTTACCTTGTTAAAAATGGTTTAGTGATTTCTCAAAATGCTAATGCTGTGCTCTCGTAG
Seq C2 exon
CTCTTGGCAGAGGAGAAGAACATCTCTGCCAAATACGCAGAAGAGAGGGACCGTGCTGAAGCTGAAGCTCGTGAGAAGGAGACAAAGGCCCTCTCCCTGGCCAGGGCCCTTGAAGAAGCCATAGAACAGAAAGCTGAGCTGGAACGAGTCAACAAGCAGTTCCGCACAGAGATGGAAGACCTGATGAGTTCAAAGGATGATGTTGGGAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.620
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGAGCTTAACCCAGCG
R:
CAGGTCTTCCATCTCTGTGCG
Band lengths:
349-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]