MmuINT0103708 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77767451-77769040:-
Coord C1 exon
chr15:77768792-77769040
Coord A exon
chr15:77767664-77768791
Coord C2 exon
chr15:77767451-77767663
Length
1128 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AGTAAAACTTCTTTCCCCAGCTC
3' ss Score
5.08
Exon sequences
Seq C1 exon
GTGACCGACATGAAGAAGAAGATGGAGGACGGTGTAGGGTGCCTGGAGACTGCAGAGGAGGCGAAGCGGAGGCTTCAGAAGGACTTGGAAGGCCTGAGCCAGCGGCTTGAGGAGAAGGTGGCTGCCTACGATAAGCTGGAGAAGACCAAGACACGGCTGCAGCAGGAGCTGGACGACCTGCTGGTTGACCTGGACCACCAGCGGCAGAGCGTCTCCAACCTGGAAAAGAAGCAGAAGAAGTTCGACCAG
Seq A exon
GTATGGCCTTCCCTCCACCTCCTTTTGTCCTCTCCCTTCGGCAGAGCAGAGTGGTGGGCACAGCCAGGTCTGCAGCTTGTTGAGGGACCAGGGGAGGACGTAACCAGAAGAGGATTTAAGAGCAGGTCTTAGAGGTTAGCCAGTCCGCCTTCCACCATGGAGATGCAGATGCAGACATAGGCCACATGGAGTAACAGCATAAAACATCAGGGTCAACACGTGCTAGACAAATCCAGTCCCCCACTGTGCTTTAAAACTATTTATTTTACACTTAGTTATTTCGTGTGTGTGTGTGTACACGCATGTGCCACAGTGTGTGTGCTGAGGTCAGAGGACAACTAGCACAAGCCCATCTTCTGTCATTTACCTGTGGAGCCATCTCCTGCACCCATAAACTTTCATTGTACATGGCCACACTCATTTGCATGCTGCCACTGGCTCTTATGTGGTAAGTGGCCAAGCTGAACGGCCTGTGAGAGGCTGTACAGCCAACAACCTCTAAGGAATGTCCTTTATGAAAGGCCCAGTCTGTGGAGCAGGTGAAGAGTGGGCAGAGAGATAGCAAGGCAGGAAGGTGGGGGATAGTGAGGGGGCCCACACAGAGCAGGCACAGTGGGTGCAGCCATCTTTGGAGAAGGGCCACGTGGGATTTAAGCCTTTAAGCAGATCTTTTCAAGAATCTGGGCAACCGAGCCGGGTAACATAAACGAGAGAATTGAGCAGAGAGATTGCAGAGATGCTCAGTTGTTAAGAGATGTTAGAGGACGCTCTTCTAGAGGACAAGTTCCATTCCTAGCAGCTCACAGCCACCTGTAATTGTGGCTCTATGGAGTCCAACACACTCTCCTAGCTTCTACTGGTACCGACACATGTATGCATGTTTGTGTGTGCATGTGTGTGCATACACACAGATGAAAATCTTTAAAAATTTAAGCAGAGATCAAAGTACAGTGCTAGAGGAGTCTCTGTCCTCCTCCTTCCAGGACTCCCTGGGAGCCAGCGAGTCCCTGGGTAACACCCTGGGAGCCAGCCAGTTCCTGGTAGCAGCCTTGGGCCTGTTGGTCTGGGTCTGGCTGTAGGGCCCAGTGGTCATCAGTCTCTTCCTCACAGTAAAACTTCTTTCCCCAG
Seq C2 exon
CTCCTAGCCGAGGAGAAGACCATCTCGGCCAAGTATGCAGAGGAGCGTGACCGAGCTGAGGCTGAGGCCCGTGAGAAGGAGACAAAGGCGCTATCACTGGCCCGGGCGCTTGAGGAGGCCATGGAGCAGAAGGCAGAGCTGGAGCGGCTCAACAAGCAGTTCCGCACGGAGATGGAGGACCTCATGAGCTCCAAGGATGACGTGGGCAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=0.803
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100),PF045827=Reo_sigmaC=PD(64.0=96.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PU(36.6=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGCCTACGATAAGCTG
R:
CTCTTGCCCACGTCATCCTTG
Band lengths:
344-1472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types