BtaINT0097437 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30240850-30241338:-
Coord C1 exon
chr19:30241032-30241338
Coord A exon
chr19:30240925-30241031
Coord C2 exon
chr19:30240850-30240924
Length
107 bp
Sequences
Splice sites
5' ss Seq
ACGGTAACA
5' ss Score
6.72
3' ss Seq
CACACCATCTTTTCTTTCAGCTG
3' ss Score
9.68
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCCACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCTGCCAACTTCCAGAAGCCCAAGGTGGTCAAGGGCAGAGCCGAGGCCCACTTCTCCCTGATTCACTACGCGGGCACCGTGGACTACAGTGTCTCAGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGAGACGGTGGTCGGGCTGTACCAGAAGTCCTCCAACAGGCTCCTGGCACACCTCTACGCCACCTTCACCACCGCGGACG
Seq A exon
GTAACAGACTCCCAGGCTGCCTCGAATCCACCCTTCTCCCCCAACTCAGCCCACAAAGGAAACAGCTCTGGAGGCCTGCTAACACCACACACCATCTTTTCTTTCAG
Seq C2 exon
CTGACAGCGGAAAGAAGAAAGTTGCCAAGAAAAAGGGTTCTTCCTTCCAAACCGTCTCTGCCCTTTTCAGGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCCAAGGTGGTCAAG
R:
GCAGAGACGGTTTGGAAGGAA
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development