HsaINT0107726 @ hg38
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10642240-10642723:-
Coord C1 exon
chr17:10642417-10642723
Coord A exon
chr17:10642311-10642416
Coord C2 exon
chr17:10642240-10642310
Length
106 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCCTCCCTTATTGCTTTCAGCTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACAGACACCTCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGAAAGTCCAACAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAGGGCCGAGGCTCACTTCTCACTGATCCACTATGCGGGCACCGTGGACTACAGTGTCTCAGGTTGGCTGGAGAAGAACAAGGACCCTCTGAACGAGACTGTGGTTGGGCTGTACCAGAAGTCTTCCAACAGGCTCCTGGCACACCTCTATGCCACGTTTGCCACGGCGGATG
Seq A exon
GTAAGAGGAGTGCTTTGTGTCCATGTGATTTCCCTCCATTTGTTCCACAGTAACAAAAAACCTTTTAGATTCACCTACAGCACGTGCCCTCCCTTATTGCTTTCAG
Seq C2 exon
CTGACAGTGGAAAGAAGAAAGTTGCCAAGAAGAAGGGTTCTTCCTTCCAAACTGTCTCTGCCCTTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063:ENST00000583535:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCAAGGTGGTCAAAGG
R:
GGGCAGAGACAGTTTGGAAGG
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development