GgaINT0127417 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:604990-605486:-
Coord C1 exon
chr18:605177-605486
Coord A exon
chr18:605067-605176
Coord C2 exon
chr18:604990-605066
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
TTATTTTTTTCATTTTGCAGAGG
3' ss Score
10.39
Exon sequences
Seq C1 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACCGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAGCAACTTCCAGAAGCCCAAGCCTACCAAAGGAAAGGTTGAGGCCCACTTCTCCCTAATACACTATGCTGGCACAGTGGACTACAATATCACTGGCTGGCTTGAGAAGAACAAGGACCCCCTGAATGAAACTGTCATTGGGCTGTACCAGAAATCTTCACTGAAAACTTTGGCCTTACTGTTTGCCAACTATGGTGGAGCAGAAGCAG
Seq A exon
GTCAGGTCTTTGAAACTCGTATTTTCACCAATTTACAAAGTAGAAAAAGTATCATAAAAGGCAAAAACAAAAATATGAAATGTCTTATATTTATTTTTTTCATTTTGCAG
Seq C2 exon
AGGCTAGTGCTGGTGCTGGCAAGAAAGGTGGCAAGAAGAAAGGTTCTTCTTTCCAGACTGTCTCAGCTCTTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACTTCCAGAAGCCCAA
R:
TCTTGCCACCTTTCTTGCCAG
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]