BtaINT0097442 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30239080-30239428:-
Coord C1 exon
chr19:30239305-30239428
Coord A exon
chr19:30239217-30239304
Coord C2 exon
chr19:30239080-30239216
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GGCATCCGTCTCCCCTTAAGGTG
3' ss Score
6.64
Exon sequences
Seq C1 exon
ATACCGAGTGCTTAATGCCAGTGCCATCCCCGAGGGGCAGTTCATTGACAGTAAGAAGGCGTGTGAAAAGCTGCTGGCATCCATTGACATCGACCACACTCAGTACAAGTTTGGACACACCAAG
Seq A exon
GTACTGTGTCAGCTCCAACAGACACTGGCCTGAGGTCCCTGACAGACCCCTCCAGAAAACTGACCCAGGGCATCCGTCTCCCCTTAAG
Seq C2 exon
GTGTTCTTCAAGGCTGGCTTGCTGGGAACCCTGGAGGAAATGAGGGATGACCGCCTGGCCAAGCTGATCACCCGGACGCAGGCCGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGGTGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCATCCATTGACATCGA
R:
TGGAATTCCACACGCATGAGG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development