HsaINT0107730 @ hg38
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10640333-10640686:-
Coord C1 exon
chr17:10640563-10640686
Coord A exon
chr17:10640470-10640562
Coord C2 exon
chr17:10640333-10640469
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCACCCTTCTGCCCCATAAGGTG
3' ss Score
5.61
Exon sequences
Seq C1 exon
ATACCGAGTGCTGAATGCCAGTGCAATCCCTGAGGGACAATTCATTGACAGCAAGAAAGCCTGTGAAAAGCTTCTGGCATCCATTGATATTGACCACACTCAGTACAAATTTGGACATACCAAG
Seq A exon
GTAATGCATCAGTTCTGACAGATGCTGGCCTTTTCGTCCTCTTGACACAGCTTCTCTAGGAAACTGACTCATGTCACCCTTCTGCCCCATAAG
Seq C2 exon
GTGTTCTTCAAGGCTGGCTTGCTGGGAACCCTGGAAGAGATGCGGGATGACCGCCTGGCCAAACTAATCACCCGGACACAAGCTGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGGTGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063:ENST00000583535:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCGAGTGCTGAATGCCAG
R:
GTCATCCCGCATCTCTTCCAG
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development