GgaINT0127421 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:602625-603351:-
Coord C1 exon
chr18:603228-603351
Coord A exon
chr18:602762-603227
Coord C2 exon
chr18:602625-602761
Length
466 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
TTTTTGTTTTATGACCTAAGGTG
3' ss Score
5.73
Exon sequences
Seq C1 exon
ATACAAAGTACTAAATGCAAGCGCTATTCCAGAGGGACAGTTCATTGACAGCAAGAAGGCTTGTGAGAAACTGCTTGGATCAATTGATATAGACCACACTCAGTATAAATTTGGTCACACCAAG
Seq A exon
GTATCAGAAGTGTTTGTTTCAAGTACTATGTATTTTTTGTTTTGTAAAGCTTGAGGATGATACTGAGATTCTTCAAGTAGCATGTGAAATCATCAAACAGTGAGTTTAAAATACATAAACTAGATACTTATTGACTCAATACTTTGAAATTCATTGATGGAGGATGATTCTAATTAAGAGTTCCTAATTGAAGATGAAGTTTTAGAATAGAAGAATCAAGATTTAATAAAAACAGTGAATAAGGTCTGGCTTTTATAGTTTTTCATGTACTGTAATATGACTGTAATAGCCAGGCCAGCATGACTGAAGATATTAAAGAGGAACTACACATGGTAACTACACATATTCTTTGTGTTTTTGCTCTTTCTCTTAACTTCCTGTGTTATCTGCCATGGAGGAACTGGTTACTTGGCTACAGTGACCAAAGAGCACATACACTGTACTTATTTTTGTTTTATGACCTAAG
Seq C2 exon
GTGTTCTTCAAAGCTGGGCTGGTTGGCCTTTTGGAGGAGATGAGGGATGAGAAGCTGGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGAGGCTTCCTGATGAGAGTGGAATACCAGAAAATGGTGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTACTAAATGCAAGCGCT
R:
TTTTCTGGTATTCCACTCTCATCAGG
Band lengths:
246-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]