RnoINT0096476 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53634948-53635301:+
Coord C1 exon
chr10:53634948-53635071
Coord A exon
chr10:53635072-53635164
Coord C2 exon
chr10:53635165-53635301
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TCTCACCCATCCTTTTGAAGGTG
3' ss Score
10.08
Exon sequences
Seq C1 exon
ATACCGAGTGCTGAACGCCAGTGCCATCCCGGAGGGCCAGTTCATTGACAGCAAGAAAGCTTGCGAGAAGCTCTTGGCTTCCATTGACATCGACCACACACAGTACAAATTTGGACACACCAAG
Seq A exon
GTGATGTATCAGTTCCGCCTCGTGCTGTAGGCCTTCGCATCCTCTTAACACAATGAGCCGGGCAGCTCATTCCTCTCACCCATCCTTTTGAAG
Seq C2 exon
GTGTTCTTTAAGGCTGGCTTGCTGGGAACCCTGGAGGAGATGCGGGATGAGCGTCTGGCCAAACTGATCACTCGGACACAAGCCGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGATGCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCCAGTTCATTGACAG
R:
GGCTTGTGTCCGAGTGATCAG
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]