BtaINT0097443 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30238740-30239216:-
Coord C1 exon
chr19:30239080-30239216
Coord A exon
chr19:30238996-30239079
Coord C2 exon
chr19:30238740-30238995
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGAG
5' ss Score
-1.54
3' ss Seq
AACTGATGTTTTGTTTCCAGGGA
3' ss Score
8.32
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGCTTGCTGGGAACCCTGGAGGAAATGAGGGATGACCGCCTGGCCAAGCTGATCACCCGGACGCAGGCCGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGGTGCAGAGAAG
Seq A exon
GTCGAGCGGGGTGTGTGCTCAGATCTGAGCTCTTTGGGAGAAGTGGGGAGTCTCTCTTAGAAATAACTGATGTTTTGTTTCCAG
Seq C2 exon
GGAGTCCATCTTCTGCATCCAGTACAACATCCGAGCCTTCATGAACGTCAAGCACTGGCCTTGGATGAAACTCTTTTTCAAAATCAAGCCCCTTCTCAAGAGTGCAGAGACGGAGAAGGAGATGGCCACCATGAAGGAAGAGTTCCAGAAAACCAAGGATGAACTGGCCAAGTCAGAGGCCAAAAGGAAGGAACTGGAAGAAAAACTGGTGACTCTAGTACAAGAGAAGAACGACCTGCAGCTACAAGTACAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGCGTGTGGAATTCCA
R:
TCATGGTGGCCATCTCCTTCT
Band lengths:
173-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development