HsaINT0107732 @ hg38
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10639996-10640469:-
Coord C1 exon
chr17:10640333-10640469
Coord A exon
chr17:10640252-10640332
Coord C2 exon
chr17:10639996-10640251
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTCCAG
5' ss Score
-3.78
3' ss Seq
AAGCAATGTCTTGTTTTTAGGGA
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGCTTGCTGGGAACCCTGGAAGAGATGCGGGATGACCGCCTGGCCAAACTAATCACCCGGACACAAGCTGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGGTGCAGAGGAG
Seq A exon
GTCCAGCAGGGTCTTTGTTCAGACATGAGCTCTTTGGGGAAGGGGAGTCTCTCTCAGAAATAAGCAATGTCTTGTTTTTAG
Seq C2 exon
GGAGTCCATCTTCTGCATCCAGTACAACATTCGCTCATTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACTGAGAAAGAGATGGCCACCATGAAGGAAGAATTCCAGAAAACCAAAGATGAACTCGCCAAGTCGGAGGCAAAAAGGAAGGAGCTAGAGGAAAAACTGGTGACTCTGGTCCAAGAGAAGAATGACCTGCAGCTCCAAGTACAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063:ENST00000583535:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.9=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGCGTGTGGAATTCCA
R:
TCCTTCATGGTGGCCATCTCT
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development