RnoINT0096477 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53635165-53636050:+
Coord C1 exon
chr10:53635165-53635301
Coord A exon
chr10:53635302-53635794
Coord C2 exon
chr10:53635795-53636050
Length
493 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGG
5' ss Score
2.53
3' ss Seq
CCGTCTTGCTTTGTTTGCAGGGA
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTGTTCTTTAAGGCTGGCTTGCTGGGAACCCTGGAGGAGATGCGGGATGAGCGTCTGGCCAAACTGATCACTCGGACACAAGCCGTGTGCAGAGGGTTCCTCATGCGTGTGGAATTCCAGAAGATGATGCAGAGGAG
Seq A exon
GTTGGGCGGGGTCTTGGTTTGAGCATGAGCTCTTTGAGAGAGGGTGGAAGTGGGAGGAGAGAATCCCTTGTAGGAATGGGCAATGCTCTGTCTGATGAGACGTGGTTTCTCTGGGTAGCCCCTATGCTGTCCTGGAACTCACTCTGTAGACTAAATTGGCTTCACACTCAAGTGATTTACCTGCCTCTGTCTCCCAAGCACTAGAATTAAAGGCATGCACCACCACTGCCAGGCTGCTTTAAAAAAAATGCCTGCACTATCTGTCTATCCATCCATCCATCCATCCATCCATCTATCCTATCTAATCTATCTATCGATCTGTCTGTCTATCCATGCTTTTTGTTTATGTGAGCAAGTACGTATGCCAAGGCACACTTGTAGCAGTCAGAGGACCACTTGCAGGAGTCAGTCCTTGACTCCACTATGTGGGGCCTGAGAATCGGGCCTGGCTTCGGCACCTTTTCCCTGCTGAGCCGTCTTGCTTTGTTTGCAG
Seq C2 exon
GGAATCCATCTTCTGCATCCAGTACAACATCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCCGAGACGGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAGACCAAGGACGAGCTCGCCAAGTCGGAGGCAAAGAGGAAGGAGCTGGAGGAGAAGCTGGTCACTCTGGTACAAGAGAAGAACGACCTGCAGCTCCAAGTACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.2=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAAGGCTGGCTTGCTGG
R:
AGAGTGACCAGCTTCTCCTCC
Band lengths:
349-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]