GgaINT0127422 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:602279-602761:-
Coord C1 exon
chr18:602625-602761
Coord A exon
chr18:602535-602624
Coord C2 exon
chr18:602279-602534
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
TTATTTGACTTACCTTTTAGAGA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTGTTCTTCAAAGCTGGGCTGGTTGGCCTTTTGGAGGAGATGAGGGATGAGAAGCTGGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGAGGCTTCCTGATGAGAGTGGAATACCAGAAAATGGTGGAGAGGAG
Seq A exon
GTAGACATTTATTTAAATTAGGTTTACTGGGTTTGGTATATTGTGTCATCCGAGTCTAAATTGCCAATATTTATTTGACTTACCTTTTAG
Seq C2 exon
AGAGTCTGTCTTCTGCATCCAGTACAACATTCGTGCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTTAAGATCAAGCCGCTGCTGAAGAGCGCAGAGTCTGAGAAGGAGATGGCCAACATGAAACAAGAGTTTGAGAAGACCAAGGAAGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGAAGCTGGTGCAGGAGAAAAATGATCTGCAGCTCCAAGTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAGGCTTCCTGATGAG
R:
TCTCAGACTCTGCGCTCTTCA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]