BtaINT0097457 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30232904-30233532:-
Coord C1 exon
chr19:30233224-30233532
Coord A exon
chr19:30233108-30233223
Coord C2 exon
chr19:30232904-30233107
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTCCATTACTGTCTGGCCAGGAT
3' ss Score
5.33
Exon sequences
Seq C1 exon
GCCGCCCTTGAACACGAAGAGGCCAAGATCCTCCGAATCCAGCTGGAACTGACACAAGTGAAATCAGAAATCGATAGAAAGATGGCCGAAAAAGATGAAGAGATCGAACAGCTGAAGAGGAACTACCAGAGAACAGTAGAGACGATGCAGAGTGCCCTGGACGCCGAGGTGCGGAGCCGGAATGAGGCCATCAGGATCAAGAAGAAGATGGAGGGGGACCTGAATGAAATCGAGATCCAGCTGAGCCATGCCAACCGCCAGGCCGCGGAGACCGTCAGACACCTCCGGAGTGTCCAGGGGCAGCTGAAG
Seq A exon
GTGTGTGGGCTCCCTGGTGGGGAACCTCTCCATCCTCAGACACGCACAGCTATGGGCTGGCCTCAGCATCCTCTGGCCTCAACTTCAAGCAGACACTTCCATTACTGTCTGGCCAG
Seq C2 exon
GATACCCAGCTCCACCTGGATGATGCTCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATCGTTGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCCACCCTGGAGCAGACGGAGAGGAGCAGGAAGATCGCAGAGCAGGAGCTCCTGGATGCCAGTGAGCGCGTCCAGCTCCTGCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.382
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(4.5=12.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100),PF040127=PspA_IM30=PU(29.2=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGATCCAGCTGAGCCAT
R:
CTCCTGCTCTGCGATCTTCCT
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development