RnoINT0096491 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53642131-53642754:+
Coord C1 exon
chr10:53642131-53642439
Coord A exon
chr10:53642440-53642550
Coord C2 exon
chr10:53642551-53642754
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAC
5' ss Score
2.93
3' ss Seq
ACACTTTCTCTTCTGGCCAGGAC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCAGCTCTGGAGCACGAAGAAGCCAAGATCCTCAGGATCCAGCTTGAACTGACGCAGGTGAAATCAGAGATCGATAGAAAGATCGCAGAGAAGGATGAAGAGATCGAGCAGCTGAAGAGGAACTACCAGAGGACAGTGGAGACCATGCAGGGCGCCCTGGATGCTGAGGTGCGCAGCAGGAATGAGGCGATCCGGCTGAAGAAGAAGATGGAGGGCGACCTCAATGAGATTGAGATCCAGCTGAGCCATGCCAACCGCCAGGCCGCAGAGACCATCAAGCACCTCCGGAGTGTCCAGGGACAGCTGAAG
Seq A exon
GTGGACGGAGCTTCCGGGGGTGGGGGGACTTTTCCAGTGTCCAGATCCGAAAAGACTAGGCAAGGCTTGTGGTCCTTGGCCCTCACTTCACACACTTTCTCTTCTGGCCAG
Seq C2 exon
GACACCCAGCTGCACCTGGATGACGCTCTCCGAGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATCGTGGAGCGCAGAGCCAACCTGCTGCAGGCTGAGGTGGAGGAGCTGCGGGCCACTCTGGAGCAGACGGAGAGGGCCCGGAAGCTGGCAGAGCAGGAGCTGCTGGACTCCAACGAGAGGGTTCAGCTGCTGCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGACAGTGGAGACCAT
R:
AGCTGCTCCTTCAGGTCCTC
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]