GgaINT0127436 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:595266-595883:-
Coord C1 exon
chr18:595575-595883
Coord A exon
chr18:595470-595574
Coord C2 exon
chr18:595266-595469
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTCTCTTGCCTGTTCTGCAGGAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCCTCCCTGGAACATGAAGAGGGGAAGATCCTGCGCCTCCAACTGGAGCTCAACCAGGTCAAGTCTGAGATCGACAGGAAGATAGCAGAGAAAGATGAGGAAATTGACCAGCTGAAGAGAAATCACCTCAGAATTGTGGAGTCCTTGCAGAGCAGCCTGGATGCTGAGATCAGGAGCAGGAATGAGGCCCTGAGGCTGAAGAAGAAGATGGAGGGAGACCTGAATGAAATGGAGATCCAGCTGAGCCACGCTAACCGTGTTGCTGCAGAGGCACAAAAGAACCTGAGAAACACACAGGCAGTGTTGAAG
Seq A exon
GTCTGTTCAGCAAAATACACATGAGGGAATGTCTTCCCTGACATTTTAGGTACCCGGGTTTGCTTTTTTAGGTGCCCCTTGTCATTTCTCTTGCCTGTTCTGCAG
Seq C2 exon
GATACCCAGATACATTTGGACGACGCTCTCAGGACACAGGAGGACCTGAAGGAGCAGGTGGCCATGGTGGAGCGCAGAGCAAACCTGTTGCAGGCTGAGATTGAGGAGCTACGGGCAGCCCTGGAGCAGACAGAGCGCTCGAGAAAAGTGGCTGAGCAGGAACTGATGGATGCAAGTGAGCGTGTGCAGCTCCTCCATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=PD(11.8=34.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGATCAGGAGCAGGAA
R:
CCTCAATCTCAGCCTGCAACA
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]