HsaINT0107746 @ hg19
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:7573]
Coordinates
chr17:10535130-10536101:-
Coord C1 exon
chr17:10535793-10536101
Coord A exon
chr17:10535334-10535792
Coord C2 exon
chr17:10535130-10535333
Length
459 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
GTTCGTTTTTCTCTGGCTAGGAT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCTGCTCTTGAGCATGAAGAAGCCAAGATCCTCCGAATCCAGCTTGAATTGACACAAGTGAAATCAGAAATTGATAGAAAGATCGCCGAGAAGGATGAAGAGATCGAGCAGCTGAAGAGGAACTACCAGAGAACAGTGGAAACCATGCAGAGCGCCCTGGACGCCGAGGTGCGGAGCAGGAATGAAGCCATCCGGCTCAAGAAGAAGATGGAGGGGGACCTGAATGAAATCGAGATCCAGCTGAGCCACGCCAACCGCCAGGCGGCGGAGACCCTCAAACACCTCAGGAGTGTCCAGGGACAGCTGAAG
Seq A exon
GTTTGAGAGAACCCATCGGGGAAAAACCTCTCTCCTCCTCACATACTCAGAAATGTAGGCTGGGCACAGTGGTGCACGCCTGTAGTCCCAGCGCTCTGGGAGACTGAGGCAAGAGGCTCACTTGAGCCCAGGAGTTTGATACCAGCCTGGGCAATATAGCAAAACCTTATCTCTACAAAAAAAATAAAAATTAGCTAGGCATGGTGGCACAAGCCTGTGGTCTCAGCTACTTGGGAGGCTGAGATGGGAGGATTGCTTTCCAGGAGGCAGAGGTTACAGTGAGCTGAGATCACGCAACTGCACACCAGCTTGGGTGACAGAACAAGACCCTGTCTCAAAACAAACAAAACAAAACAAAACAAAAACAAACAAACAAACAAACAAAACTCAGAGATGCAGATGAGGCTCGTGGTCCTAACGCCTCAACTTCAAATAGAATGTTCGTTTTTCTCTGGCTAG
Seq C2 exon
GATACGCAGCTCCACCTGGATGATGCCCTCCGGGGCCAGGAGGACCTGAAGGAGCAGCTGGCGATTGTGGAGCGCAGAGCCAACCTGCTGCAGGCCGAGGTGGAGGAGCTGCGGGCTACTCTGGAGCAGACGGAGAGGGCCCGGAAACTGGCGGAACAGGAGCTCCTGGACTCCAACGAGAGGGTGCAGCTGCTGCATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-MYH3:NM_002470:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.252 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGAGCAGCTGAAGAGGA
R:
TCTCCGTCTGCTCCAGAGTAG
Band lengths:
345-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)