BtaINT0097637 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56541211-56543101:+
Coord C1 exon
chr20:56541211-56542068
Coord A exon
chr20:56542069-56542977
Coord C2 exon
chr20:56542978-56543101
Length
909 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTCTCTCTACCCTGGTTCAGTTT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GAGGAAGCAGCCCGGAAGCAGCGGGAACTGGAAGCCTTGCAGCAGGAGAGTCAGAGGGCAGCGGAGCTGAGCCGGGAGCTGGAGAAGCAGAAGGAGAACAAGCAGGTGGAGGAGATCCTGCGGCTGGAGAAGGAAATCGAGGACCTGCAGCGCATGAAGGAGCGGCAGGAGCTGTCCCTGACCGAGGCGTCCCTGCAAAAGCTGCAGCAGCTGCGGGATGAAGAGCTGCGGCGGCTGGAGGACGAGGCCTGCCGCGCCGCCCAGGAGTTCCTGGAGTCGCTCAACTTCGACGAGATCGACGAGTGCGTCCGCAACATTGAGCGCTCCCTGTCGGTGGGGAGCGGGTGCACAGGCGAGCAGGGCGCCGGGGCGGAGAAGCCCAGCTTCAACTTCAGCCAGCCCTACCCAGAGGAGGAGGAGGTGGATGAGGGCTTCGAGGCTGACGACGATGCGTTCAAGGACTCGCCCAACCCCAGCGAGCACGGCCACTCAGACCAGCGCACCAGCGGCATCCGGACCAGCGACGAGTCCTCGGAGGAGGACCCCTACATGAACGACACCGTGGTGCCCACCAGCCCCAGCGCTGACAGCACCGTGCTGCTGGCCCCCTCGGAGCACGACTCCTCCGCCGGGGAGCCCACCTACTGCCTGCCCCAGACCCCGGGGGCCCTGCCCGCCCCAGAGGGCGACTACGATTACGATCAAGATGACTACGAGGACGGGGCCATCACCTCCGGCAGCAGCGTGACCTTCTCCAACTCCTGCAGCAGCCAGTGGTCCCCAGACTACCGATGCTCCGTGGGCACCTACAACAGCTCGGGGGCCTACCGGTTCAGCTCGGAGGGCGCTCAGTCCTCG
Seq A exon
GTGAGTACCCGCCGGCCTGGTGCCACCCACCTCCCCGCCTCTTGCCCCCTGCCCGCCCTCATTGGGCTGGAAGTTGTCTGTCATCCACGCCCCTGTTGCACCCTCCCTGGGATGAAGACATCCCCCCACAGGATGGGCCAAAGGCAGGGCCTTATAGCTGGTCTGAGACCCATCTCTCTTGCCAGAAGCAATCCGGTGAGAAAATGGGCCTGTTGGAGCTTCAACACAAAACCCAGAGAACTGCATTTTGCCCAACGTCTAAGAAAACTGGCATGCTCAGTGGAGAACTTGGCCCGTGTCTCTCCTGGCTTTGCAGGAGGTTGGGAAATAAGGCCCGCTCTAAGCTCTAATGAGGCTCACCAGGGACCTTTCAGAGAATGCTCCAGACAGTAGCTTCAGGCTCACTGCAGGATATTGTGTATTGTTCTCATTGTAAGGGAGGAAACTTTGCAGGCTTCAGCAGGCCCTTTGTAGCTTCTGGATTTATTTGTAGTTCACTTTTTTTTCTCCTTTCTTTTCATTGACCATGTGTTAAATGGTCTCTGGATTTTGCTAAGATTTGAAAGATACATTTAGCACAGTAACCTAGAGGGGATTAACTCTTGAGTGGTTTGATTAAAATTACATGTTTAAGCAGTAGTGTTGTACTTAGAATACAGAGTCTTGGGATTAAAGTATGTCTCGTGTGCTACATCTCAAGTCCACCGACCACTCTACACCAGCAGTCAGTATTTTGTAATTCTGAATTCTTTTGATGACCACACTCCATTTTATTGTCACAAATCGGCCTGTGGCTTCTTCGTCAGTTACTTTTATTTTTTCAGTGTTGATCTGTGCTGGGCATTTCTGGTGATTGTTTTCTGTCCTTGTGGCTCACTGTTGGCTCTCTCTCTCTCTACCCTGGTTCAG
Seq C2 exon
TTTGAAGATAGTGAAGAGGACTTCGATTCTCGGTTTGATACAGACGACGAGCTTTCGTACCGGCGGGACTCTGTGTACAGCTGTGTCACGCTGCCTTACTTCCATAGCTTCCTGTACATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(25.0=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGACCCCTACATGAACG
R:
ACCGAGAATCGAAGTCCTCTTC
Band lengths:
357-1266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]