GgaINT0096746 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75609834-75611659:+
Coord C1 exon
chr2:75609834-75610736
Coord A exon
chr2:75610737-75611535
Coord C2 exon
chr2:75611536-75611659
Length
799 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TCTGTTCCTTTCTTTCATAGTTC
3' ss Score
10.24
Exon sequences
Seq C1 exon
GCTGAAGAGGAGAGAAAGAAACAGGAACTGGCTGCCATTCAGAAAGCCCAGAAGGAGGTGGAGCTGAAGCAAGAGGTGGAGAGGCAGAAAGAAAGCAGGCAGGTAGAAGAAATCTTGCGTTTGGAAAAAGAAATTGAAGACCTGCAGCGTGTGAAGAAGCAGCAGGAGCTGTCTTTGACCGAGGCTTCGTTACAGAGGCTGCAGCAACTCCGAGATGAGGAACTCAGGCGGCTCGAGGATGAAGCTTGTCGAGCAGCCCAGGAGTTCCTGGAATCTCTGAACTTTGCTGAGATCGATGAATGTGTCCGAAACATTGAGAGGTCGCTCTCTGTGGGCAGTGGATATCCTGCTGAGCTCACTGAACAAACTGGAAATGCCTGCAGTGAAAAGCCCAATTTTAACTTCAGCCAGCCGTATCCTGAGGAGGAGGTAGATGAGGGCTTTGAAGCTGATGACGATGCATTTAAGGATTCACCCAATCCAAGTGAGCACGGCCATTCTGATCAGAGGACCAGTGGCATCAGAACAAGCGATGATTCCTCAGAAGAGGATCCGTATATGAATGACACTGTGGTGCCAACAATTCCTGCTGCTAGCAACACCATGCTTATACCTCCTACCCATGATACAGTCAGTCTTCACAACTCTTCAAGTGGCGAATCTACATACTGCATGCCAGAAAACGTATCATGTAGACCACCAGACTCTGTGGAACTTATTTCTCCAGATGGAGACTATGATTACGACCAAGATGATTACGAAGATGGTGCTATTACTTCTGGTAGCAGTGTGACCTTCTCTAATTCGCACAGTAGCCAGTGGTCACCGGACTATCGGTGCTCAGTGGGGACATACAATAGCTCTGGAGCATACAGGTTTAGTTCTGAAGGAGCTCAGTCTTCT
Seq A exon
GTAAGTATCATTCCTTGTATTATCTAATAATTGATTTATGCTTGTTGATTTTTTCCATTCTACAACCATTGTACAACTGTAGCTTTTCTTAGAAATGCTTTTGTTGTAAAATTCTACTTACTTGCACTGCATATGGGCATAGGTAAGTGTTGATTGCAATTCTAGGGTTATGCAAGGGTATGGTTCTGTCTGGTTTAATGCAGAACTGCACATTATTTTACGAGGATCTCAGTGCATGGCCATGGATGCAATTCATAAGCAAAATTTGTGTGTGCGTGCCCATTTGGAGTGGGAGGATTGGGTAGCATTGTGAGGAACTGATTTTGGAAAAGGCAGGTTCAGTTCCGCATGCAAGTCAGAACAGTGTTGAATAAACTGCTTGCAGAAATCCCCAAGATGTCAGATGTATTTGAGATTACTTTAAGAGTAGATTTCAGATGATGGCAAATAGTAGCATTACTGAAGCAGTTAATTGAAGGGCTGTTTTTTCAGTGCTGTTTACTGAATTGACAGTTTACTCTCATGAATATTTTTTGGAAGAATATGATTTCTTCTGCCACTCACAAAATAATTCAGTGGAACTGTGTGTCTGGGAAACTGAAAACATATTTCAGCAACACTGACTTCTTTAGAAGAAAGATGTTAGCACTAAAATATCTACTGCAGCTGAGGTAATGAAAGACAAGGAAATTATGTCCATTCAATACATCATAAAATGTTTTAGCTGAAGACTACTAAACCTGTTTTCTCTAAGCTCTTTCATGAGAAATCATTTTACCTCTGTTCCTTTCTTTCATAG
Seq C2 exon
TTCGAAGACAGTGAAGAAGATTTTGACTCCAGGTTTGATACAGATGATGAACTTTCCTACCGGAGGGATTCCGTCTACAGCTGTGTTAGCCTGCCCTACTTTCACAGCTTTCTGTACATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0520311=Hom_end_hint=FE(56.7=100)
A:
NA
C2:
PF0520311=Hom_end_hint=FE(7.8=100),PF0016924=PH=PU(25.0=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAACTCTTCAAGTGGCGA
R:
AGCTGTAGACGGAATCCCTCC
Band lengths:
347-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]