HsaINT0108173 @ hg19
Intron Retention
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16699559-16701947:-
Coord C1 exon
chr5:16701072-16701947
Coord A exon
chr5:16699683-16701071
Coord C2 exon
chr5:16699559-16699682
Length
1389 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
GCTTCTCTCTCTCGGTCCAGTTT
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAAGAAGAAACGAGGAAGCAGCAAGAACTCGAAGCCTTGCAGAAGAGCCAGAAGGAAGCTGAACTGACCCGTGAACTGGAGAAACAGAAGGAAAATAAGCAGGTGGAAGAGATCCTCCGTCTGGAGAAAGAAATCGAGGACCTGCAGCGCATGAAGGAGCAGCAGGAGCTGTCGCTGACCGAGGCTTCCCTGCAGAAGCTGCAGGAGCGGCGGGACCAGGAGCTCCGCAGGCTGGAGGAGGAAGCGTGCAGGGCGGCCCAGGAGTTCCTCGAGTCCCTCAATTTCGACGAGATCGACGAGTGTGTCCGGAATATCGAGCGGTCCCTGTCGGTGGGAAGCGAATTTTCCAGCGAGCTGGCTGAGAGCGCATGCGAGGAGAAGCCCAACTTCAACTTCAGCCAGCCCTACCCAGAGGAGGAGGTCGATGAGGGCTTCGAAGCCGACGACGACGCCTTCAAGGACTCCCCCAACCCCAGCGAGCACGGCCACTCAGACCAGCGAACAAGTGGCATCCGGACCAGCGATGACTCTTCAGAGGAGGACCCATACATGAACGACACGGTGGTGCCCACCAGCCCCAGTGCGGACAGCACGGTGCTGCTCGCCCCATCAGTGCAGGACTCCGGGAGCCTACACAACTCCTCCAGCGGCGAGTCCACCTACTGCATGCCCCAGAACGCTGGGGACTTGCCCTCCCCAGACGGCGACTACGACTACGACCAGGATGACTATGAGGACGGTGCCATCACTTCCGGCAGCAGCGTGACCTTCTCCAACTCCTACGGCAGCCAGTGGTCCCCCGACTACCGCTGCTCTGTGGGGACCTACAACAGCTCGGGTGCCTACCGGTTCAGCTCTGAGGGGGCGCAGTCCTCG
Seq A exon
GTAAGTACCTGCCTGGCGTGTCCCAGTGAAATGGGTGGCCGGTCACACCCACCCCTGTTGCATCCTCAAGTTGAATGAAGATACCCGTAGGATATCTGTGCAAAGATTGCAGAGTCGTGGTCTTAGAGATCATCTTAAACCTTTTGCTTATTCCATAAGCCAATTGCATTCATAAGTAGAACTTTGATGTGCCTGTTTCAGTTTTAGCACAAAGCCTAGAGCTGAGCTGTGCCCAAGACTTCAGAAAACTGGCTATTTATTTATTTATTGTTGTTGTTGTTGTTTTTGAGGTGGAGTCTTCTCTGTCATCCAGGCTGGAGTGCATTGGCAGGATTTTGCCTCACTGCAGTCCCCACCTCTCGGGTCCAAGCTATCCTGCTGCCTCAGCTTCCTGAATAGCTGGGATTACAGATGCCCGCCAGCACACCGGTCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGACCCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCTTAAAACTGGCTTTTTAAATGGAACTTTTGTTTATTTTATTTTATTTCTTCCTTCCCTTTTTTTACAATTTGAATGGAACTTTTAGCTTTGCCGTGCTGCGTTAGGAAATGAAGACACATCCTGAACTGGAACAAGACTTGCCAGGGGTGAACTGGCAAACTTTCCTTGTACTAACTTCACAATCCAAACCACACGATGTTATTTCTTATAGTGGCTGTAAAGGAAGAAGCTGCAGGGCTTAAATGTACTCTTTTCCAGTTTCTGGATTTATCTGTAGTTTACTTTTATTTTGTCGCTTTGGTCGTGCATTGAATGTTCTCTTGACTTTCAAAGATTTGAAAATATATTTAATATAGTAATTCAGAGGGGGTGAACTCTTGCATGGTTTGATTAAAATTATAGCCTTAAAAAGCATTGTTAGTTTTAGGGCAGATAGCCTTTGGATTCAAGTATATCTTGTCTTTCATGTATCAATTCAACTGACCATTTGACCTTAAAAGTTGGTATTTTTAATTCCGAATTATTTGTGTGCTACCGTAAATCAGGCGTATTGCTTGTCAGTTGTTTTTTTTCTTTTTCCTTTTCCCTTTTTTTTTTTTTTTTTTTTTGAGACTGAGGCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTCTGCTCAGTGCAGTCACTGCCTCCTGGGTTCGAGTGATTCTGCTGCCTCAGCCTCTTGAGTAGCTGTATTTTTGTATTTTTTCAATGATGATACATGCTGGGTATCTTCGTGGCTTGCTTTGTGGCCTTTTCCCTCACCGTTGGCTTCTCTCTCTCGGTCCAG
Seq C2 exon
TTTGAAGATAGTGAAGAGGACTTTGATTCCAGGTTTGATACAGATGATGAGCTTTCATACCGGCGTGACTCTGTGTACAGCTGTGTCACTCTGCCGTATTTCCACAGCTTTCTGTACATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-MYO10:NM_012334:25
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(25.0=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTACACAACTCCTCCA
R:
GGCAGAGTGACACAGCTGTAC
Band lengths:
346-1735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)