RnoINT0096755 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78038671-78040973:+
Coord C1 exon
chr2:78038671-78039555
Coord A exon
chr2:78039556-78040849
Coord C2 exon
chr2:78040850-78040973
Length
1294 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TCCTCTGTCTCCTTGTCCAGTTT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GAGGCAGAAACAAGGAAGCAACAAGAACTCGAGGCCTTGCAGAAGAACCAGAGGGAAGCGGACCTGACCCGAGAGCTGGAAAAGCAAAGGGAGAACAAGCAGGTGGAAGAGATCCTCCGCCTGGAGAAGGAAATCGAGGACCTGCAGCGCATGAAGGAGCAGCAGGAGTTGTCGCTGACCGAGGCCTCCCTGCAGAAGCTGCAGCAGCTGCGGGATGAGGAGCTGCGCAGGCTGGAGGACGAGGCGTGTCGAGCTGCCCAGGAGTTCCTAGAGTCCCTCAACTTCGATGAGATCGACGAGTGTGTCCGCAACATCGAGCGCTCCCTGTCCGTCGGCAGCGAGATTTCAGGTGAGCTCAGCGAGCTTGCAGAGAATGCCAGCGGGGAGAAGCCAAATTTCAACTTCAGCCAGCCCTACCCGGAGGAGGAGGTGGACGAGGGCTTCGAGGCTGATGACGATGCCTTCAAAGACTCACCCAACCCCAGTGAGCATGGCCACTCTGACCAGCGGACCAGTGGCATCCGGACCAGCGACGACTCCTCTGAGGAGGACCCTTACATGAACTACACGGTGGTGCCCACCAGCCCCAGTGCCGACAGCACAGTGCTGCTTGCTGCCTCTGTGCAGGACTCTGCCAGCCTGCACAACTCCTCCAGCGGGGAGTCCACGTACTGCATGCCGCAGAACAACGGGGACCTGCCCTCCCCCGATGGCGACTATGACTATGACCAGGACGATTATGAGGATGGCGCCATTACCTCAGGCAGCAGCGTGACATTCTCCAACTCCTACGGGAGCCAGTGGTCCCCAGACTATAGGTATTCCGTGGGGACCTACAACAGTTCCGGAGCGTACCGGTTCAGCTCAGAAGGAGCGCAGTCCTCC
Seq A exon
GTGAGTATCTGCGGTCCTGTGCATAACTGTGGAAGAGCTCCACTGTCCACTCTCCGTAGCATTAACACAGATCCCTAAAGATTTCAGTCATATTCCTAAAGATATCCTTAAGGCCCTTCCTCTTTCCAAAGTCCCGTTAAACCAATTAAAATGGGGGTCATCACCACTGTAAAGCCCAGAACTGACCTTCACCCAGGCCATGACTAAACTGACCTGTTATTTTTATTTCTCTGTGTGTAAACGTGTATATAGAGCCCTGAGAAAAACCATTCCTCAAAATACCATCTACCGTTTGTGGGCAGGGGGAGGAGGAGTAGGGGGAGAGGGAGGGGGGACTTATTGGCCTGACCCTCACCCAGTAGGTTATAGTAGGCTACGCTGGCCAGTGACCCTGGAGGTCCATCTTCCTCCATTCCCTGGTGCTGGGATTATAAGCAGGTCTATACAACTCTAGCTGTTTTTACATGGACTTTGAGAAGCCACACAGGTAGTGTAGGCACTTCACTAGCAGAGCCATCTGCCAAGCCATAAACTACCGACAGGTTAGACAGGCAGATTCTGGTGTGGCCATAGACCCACACTGGCATTTTTTTTTTTTTTTTTTTTTTAATTTTTATTGAGCTGGGGACCGAACCCAGGGCTTTGCGAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCACACTGGCATTTTAAATGAGGCTCAGCATGGCCTTTCTGCAGAGGTACCTGGAGGAAGCTGGCCCACTCACTCTCCTGGGGTATATTGAGGAACGTTACTTACAGTACATACCACTCAGGCTATTTGTTTTAATAAGGAGGGATCTGTAGGGTTTGAACATGTTCTGTTCTTTTTTTAAGTTTTTTTGGGGGGGATTTGTTTGTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTTCCTTCTATGTATGAAATGTCGTCTTTAGTTTCTCAGACTTGGCCAATGTTTTTGGCATAGCAACTTAAAGAAGAGTAACCCTTTCGTGCCTTGACTAAAATGAGACCCTTAAACATTCTTCTTTTTAGCATGGAGTCTTTGGATTAGAGTCAGCTTATATTGTAGATATCAGGTCAGCTCACTAGCAGACCCTGGGTTTGAGTACTCTGTAATTCTGAATTCTTTGGATGGCCACAGTAGCTGTACCATCCTGAGTCAGGAGCGCTCCTTCTCAGTTATGTGGAGCTGTAGACGGTTAGCCCATGATGGGTGTTTTCATTGCCCATTTCCCATCCTCTGCTTACCACTGCCTCTCCTCTGTCTCCTTGTCCAG
Seq C2 exon
TTTGAAGATAGTGAAGAGGACTTCGACTCGAGGTTTGATACGGATGATGAGCTCTCCTACCGGCGAGACTCTGTGTATAGCTGCGTCACACTGCCCTATTTCCACAGTTTCCTGTACATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(25.0=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCTGTGCAGGACTCT
R:
TACACAGAGTCTCGCCGGTAG
Band lengths:
349-1643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]