MmuINT0103877 @ mm10
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25780974-25783041:+
Coord C1 exon
chr15:25780974-25781864
Coord A exon
chr15:25781865-25782917
Coord C2 exon
chr15:25782918-25783041
Length
1053 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
TCCTCTGTCTCCTCATCCAGTTT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAGGCAGAGACAAGGAGGCAGCAAGAACTGGAAGCCTTGCAGAAGAGCCAGAGGGAAGCGGACTTGACCAGGGAGCTGGAAAAGCAAAGGGAGAACAAGCAGGTGGAGGAGATCCTCCGCCTGGAGAAGGAAATCGAGGATCTGCAGCGCATGAAGGAGCGGCAGGAGCTGTCGTTGACCGAGGCCTCCCTGCAGAAGCTGCAGCAGCTGCGGGATGAGGAGTTGCGCAGGCTGGAGGATGAGGCCTGCCGCGCCGCCCAGGAGTTCTTGGAGTCGCTCAACTTCGACGAGATCGACGAGTGCGTCCGCAACATCGAGCGCTCCCTGTCGGTAGGGAGCGAGATTTCGGGCGAAGAGCTCAGTGAGCTTGCCGAGAGTGCCAGCGGAGAGAAGCCAAACTTCAACTTCAGCCAGCCCTACCCCGCGGAGGAGGAGGTGGACGAGGGCTTCGAGGCGGATGACGACGCCTTCAAGGACTCGCCCAACCCCAGCGAGCACGGCCACTCCGACCAGCGAACGAGTGGCATCCGGACGAGCGACGACTCATCCGAGGAGGACCCTTACATGAACTACACGGTGGTGCCCACCAGCCCCAGTGCCGACAGTACGGTGCTTCTTGCTGCGTCCATGCAGGACTCCGCTAGCCTGCACAACTCCTCGAGTGGGGAGTCCACCTACTGCATGCCGCAGAACAACGGCGACCTGCCCTCCCCCGACGGCGACTATGACTATGACCAGGACGATTACGAGGATGGCGCCATCACGTCAGGCAGCAGCGTGACTTTCTCCAACTCCTATGGAAGCCAGTGGTCCCCCGACTACAGGTATTCCGTGGGAACCTACAACAGTTCCGGAGCGTACCGGTTCAGCTCAGAAGGGGCGCAGTCCTCC
Seq A exon
GTGAGTATCTGCCATCTTGTCCCTAAAGGTGGGAGAGTGGGGGTGGGGGTGGGAGGGCTCTCATTGGCCTAGACCTCACCCAGGAGTCTATAGTGGGCTATGCTGGCCAGTGACCCAGGAGATCCACCTACCTCTCTTCCCTAGTGCTAGGGTTATAAGCAGGTCTAAACAACTCAAGCTGTTTTTACAAAGACTTTGAGAATCCACTCAGGTAGTGTACGTACTTCACTAGCAGAGCCGTCTGCCAAGCCATAAACTCCTGACTGGTTGGAGATGAGATCAGGCACATTCAGAATGGTGTAGTCATAGATAGACCAGAACTGGCATCTTAAAAATGAGGCTCAGCATGGCTTTTCTGCAGACCCTGAGGAAGCTGGCCCACTCACTCTCCTGGGGTGTATTGAAGTACAGTCCAAGCCACTCAATGTATTTCTTTTAATAAGGAGGGAATCTATATAGTTTAAATGTGTTCTTTTTTTTTTTTTCTTACGTTTGGCTTTTTCTCTTATGTATTAAATGTTGTCTTTAGTTCCTCAGATTTGACCAATATTTTTGGCATAGCAACTTAAGGGTTTCTTTAACTTTGTTTGTTTGTTTGTTTGTTTCAAGACAGAGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTGATTAAAGGCGTGCACCACCACTGCCTGGCTGAGTTTCTTTAACTCTTGTGTGGCTTGATTAAAATGAGACCCTTAAACATCCTCTTTAGCGTGGAGTCTCTGGGTTAGAGTCAGCTTATAGTGTAAGTGTTGGGTCAGCTCACTGGCAGATGCTGTGTCTGAGTTCTCTGTTACATTCTGAATTCCCTGGACGGCCACAGTAGCAGTGTCGTCGAGTCAGGAGCGCTCCTCCTCCGTTGTGTGGCGCTGAAGATGGTTAGCCCATGCCGGGTGTTTTCCTTACCCGACTCCCGTCCTCTGCTTACCTCTGCCTCTCCTCCTCTGTCTCCTCATCCAG
Seq C2 exon
TTTGAAGACAGCGAGGAGGACTTCGACTCCAGGTTTGATACAGATGATGAACTTTCCTACCGGCGAGACTCTGTGTATAGCTGCGTCACACTGCCCTATTTCCACAGTTTTCTGTACATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272:ENSMUST00000110457:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0016924=PH=PU(25.0=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTACGGTGCTTCTTGCTG
R:
TCTCGCCGGTAGGAAAGTTCA
Band lengths:
358-1411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types