BtaINT0097641 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56553581-56554677:+
Coord C1 exon
chr20:56553581-56553674
Coord A exon
chr20:56553675-56554621
Coord C2 exon
chr20:56554622-56554677
Length
947 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TGCTTTTCGCTCCTTTCCAGGGC
3' ss Score
10.64
Exon sequences
Seq C1 exon
CCAGTGGTTCAGTGTGCTGAGTCAGGTCCACGCATCCACAGACCAGGAGATTCGGGAGATGCATGATGAGCAGGCAAACCCACAAAACGCTGTG
Seq A exon
GTATGTAAGCTGTGGTGGAGTGGAGGGGGGCAATCCCAAGAGGGGCAAGGGGACCAGGAACTTGCGGACAGTTTTTTTTTTTTTTTTTAAGTAAGTAATAGTATAATAATTGGGCTTTCCAGGTGGCTCAGTTGGTAAAGAATCTACCTGTGATGCAGGAGATGCAGGTTTGATCCCTGTATTGGGAAGATCCCCTGGAGGAGGGCATGGCTACCCACTCCAGTAGTCTTACCTGGAGAATCCCCATGGACAGTGAATCCATGTCCTGCATCATGGAAGGCTATCGTCCATGGGGTCCCAAAGAGTAGACATGACTAGAGCAACTAAGCACACACACACTATAATAATGAAAGAGAGAAACAGGAATATCTTGGTAAAAATCATTCAGAAACACAAGAAATTATAGAAGATTCTGAGTGGTAATAGATTACAGATTGCCCATCTGGAACAAAAAGCATTCCAGTTTTTATGAAATCATTTAAGCTTATTATATTTTCTTCAAAAGATTTACTGAATTACAAATAGTATTCATTCTATTGTTATTCTATCCCAGACATGTATAAACAGAGCCACAAAACCATATTTTAGAAGTAGTTTCCTTTTCATATAAATATAAAATTCAAGATAGATCATAATATAAATCAGAAAATTGGTACGATTGAAAGAAGTTCATAAACACTCTTCACTGAAAGTATTTTAGGAACAAGACAGAAAGATTCGCTTATAATTTATTTGATGAGTAGACTGTAGATTCTGCCCTGTCTCAAGGCTGTCTGTACTGAATGAAGGGGAATGTTTCTTTAGATAACTATTACTTCACAGTTAACACAAAAAGAAGGAGCCTTTTTTGTTTGCCTGCTTGGAGAGGCATCATCTAGGGGTGTTATCATGATGTGTGCTGTACTCCAATGGTTCTCTGAGTTTCTCTGCTTTTCGCTCCTTTCCAG
Seq C2 exon
GGCACTTTGGATGTGGGGCTGATCGATTCTGTGTGCGCCTCGGACAGCCCAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(11.2=34.4),PF0016924=PH=PU(25.0=56.2)
A:
NA
C2:
PF0016924=PH=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]